SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene3641

Length: 2235 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene3641
GAAGTCACTGATCCCAAGGCCACTGTTCAGGAAGGCGCACAGTTTGCTAGCCGATTGACGGGAATTAAAGAGAATCAGAAGTTCCAAAAGCATCGTAGAGGATGTGAGATAACACAAGATCCCCCAGGGCTCAGACATGTTGTGGAAGAAGCAAAGGAGCACCACAACGTGAAATATGTCTATGTGTGGCATGCCCTTGCTGGTTACTGGGGTGGGGTCAAACCAGCTGCAGCTGGAATGGAGCATTATGATTCCTCCCTTGCTTATCCTGTCCAGTGTCCTGGAATTTTGGGCAACCAACCAGATGTTGTTTTGGATAGTCTTTCAGTTTATGGATTAGGCCTTGTTCATCCGAAGAAGGTCTACAATTTCTACAATGAGTTACACAGCTATCTGGCATCGGCTGGTGTTGATGGTGTCAAAGTTGATGTTCAAAACATCATTGAAACTTTAGGTGATGGTCATGGGGGTCGTGTGTCTATTACAAGGCAATATCATCAAGCATTAGAAGCTTCAATTGTTCGCAATTTTCCTGATAATGGCTGTATTGCTTGTATGTGCCACAATACTGACGGGCTTTACAGTGCGAAGCAGACAGCGGTTATAAGAGCTTCCGACGACTTTTTTCCAAGCGATCCGGCTTCACATACTATTCATATTTCCTCTGTTGCTTACAATACCTTGTTTCTGGGAGAATTCATGCAACCAGATTGGGATATGTTTCATAGCTTACATCCAGCAGCTGAATACCATGGTGCTGCTCGAGCTGTCGGAGGCTGTGCAATTTATGTCAGTGACAAGCCAGGGGTTCATAACTTTGATCTACTGAAAAAGCTAGTCCTCCCTGATGGATCTGTTTTGCGTGCGCAACTGCCTGGAAGACCGACGCGGGACTGTCTCTTCGTAGATCCAGCCAGAGACGGGAAAAGCTTGCTGAAAATATGGAACCTAAATAAATATACTGGAGTACTGGGTATCTTTAATTGCCAAGGAGCAGGATGGTGCAAAGTTGAAAAGAAGAATCGTATTCATGATTCATCTCCGATGACCTTAAGTGGTAGTGTGCGTGCTCAAGATGTTGACTTCCTTCCACAAATTGCTGGTGATGGTTGGAATGGAGATACTGTAATCTACGCTCATAGAGCAGGAGAGCTTGTTCTACTTCCAAAAGGTGCTGCCATACCTGTTACGTTGAAAGTGCTTGAGTTTGAGCTTTACACGGTGACTCCCGTCAAGGACGTTGCATGTGGTATCTCCTTTGCTCCTGTCGGACTAATTAACATGTTCAACTCTGGTGGCGCAATTGATGAATTCGACATACATACAGATTCCCAAAACCCTGAACTAAGTGGTTCTCTGACAGTTGATATCAGAATGAAAGTTCGTGGGTGTGGTACATTTGGAGCATATTCCACGCATAAACCAAAGAAGTGTTCTGTTGATTCATGTGAAACAGAATTCACATATGACTCTGCAAGTGGTCTTCTGACATTTGCAATTCCTATTTCAAAAGAAGAAATGTATAGGTGGGATGTTAAAATTGAAATTTAAGTGACAGGTTTGATCCTCTCACTTAATCATCATCTTATTCTACCAAAAGATGCATCTATTATGCCAGTGGGAACATACAAATCTCCCGTGAGGGAGATGATCACAGGAAAGTCTCCTATTATCCCAATGGGAACATACAAATCTCCCTCGAGGGAGGAGATGATCACAGGAAAATCTCCCTGATTTCTTGGCCGGCCAATGAGACGGGGAATATGATGATCTGTCAAAGCAATGTTGCTATGCAGTTAGGCACCTCGTACTGTTATCTTCGTCATGTATTTTCCTCTGTTATGACGTCATGTATTTTCCTCTCTTATGATAGGAAAGAGGTACTGCATCACTTTACATTTTTTAGATTTCTTGTTGCATAGGTAGGTTTATGTTTACCAATTTCCTCTTGTCGAGCGTCTCTTTCTGTCACACCACTGGTGTCGTATATTTGAAAGGTCTTATCAAGACTTCCAGGGTGGGGACAAAGGAGGGTTAAATCTGTCACAGGATTTACTCGAGTCTATGGAGACCTTATCTTTATTTTAGTAATAAAAAATAAAGATCTGTTCAGCTCTCTTTCCTGGCATCATGTTTAGTGGTCAAACTCTTCATTTTAAATATGCAAGCAAATAAGTGAATAAAATTCATAGCAGAATGGAATAATGAAACAGTGTTTTGGGCTGAATTAAACCC

Ace file of the UniGene sp_v1.1_unigene3641

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Raffinose_syn domain containing protein	-	-	54%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	66%
Blast2go	seed imbibition protein	-	-	83%

Source	InterPros	Term	Type	Identity
Blast2go	Raffinose synthase	IPR008811	-	83%
Blast2go	Aldolase-type TIM barrel	IPR013785	-	83%
Blast2go	Glycoside hydrolase, superfamily	IPR017853	-	83%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5AEI9

Fln msg: your sequence is longer than subject: 438 - 338

Fln protein: MEHYDSSLAYPVQCPGILGNQPDVVLDSLSVYGLGLVHPKKVYNFYNELHSYLASAGVDGVKVDVQNIIETLGDGHGGRVSITRQYHQALEASIVRNFPDNGCIACMCHNTDGLYSAKQTAVIRASDDFFPSDPASHTIHISSVAYNTLFLGEFMQPDWDMFHSLHPAAEYHGAARAVGGCAIYVSDKPGVHNFDLLKKLVLPDGSVLRAQLPGRPTRDCLFVDPARDGKSLLKIWNLNKYTGVLGIFNCQGAGWCKVEKKNRIHDSSPMTLSGSVRAQDVDFLPQIAGDGWNGDTVIYAHRAGELVLLPKGAAIPVTLKVLEFELYTVTPVKDVACGISFAPVGLINMFNSGGAIDEFDIHTDSQNPELSGSLTVDIRMKVRGCGTFGAYSTHKPKKCSVDSCETEFTYDSASGLLTFAIPISKEEMYRWDVKIEI*

Protein Length: 439

Fln nts: GAAGTCACTGATCCCAAGGCCACTGTTCAGGAAGGCGCACAGTTTGCTAGCCGATTGACGGGAATTAAAGAGAATCAGAAGTTCCAAAAGCATCGTAGAGGATGTGAGATAACACAAGATCCCCCAGGGCTCAGACATGTTGTGGAAGAAGCAAAGGAGCACCACAACGTGAAATATGTCTATGTGTGGCATGCCCTTGCTGGTTACTGGGGTGGGGTCAAACCAGCTGCAGCTGGA_-_ATGGAGCATTATGATTCCTCCCTTGCTTATCCTGTCCAGTGTCCTGGAATTTTGGGCAACCAACCAGATGTTGTTTTGGATAGTCTTTCAGTTTATGGATTAGGCCTTGTTCATCCGAAGAAGGTCTACAATTTCTACAATGAGTTACACAGCTATCTGGCATCGGCTGGTGTTGATGGTGTCAAAGTTGATGTTCAAAACATCATTGAAACTTTAGGTGATGGTCATGGGGGTCGTGTGTCTATTACAAGGCAATATCATCAAGCATTAGAAGCTTCAATTGTTCGCAATTTTCCTGATAATGGCTGTATTGCTTGTATGTGCCACAATACTGACGGGCTTTACAGTGCGAAGCAGACAGCGGTTATAAGAGCTTCCGACGACTTTTTTCCAAGCGATCCGGCTTCACATACTATTCATATTTCCTCTGTTGCTTACAATACCTTGTTTCTGGGAGAATTCATGCAACCAGATTGGGATATGTTTCATAGCTTACATCCAGCAGCTGAATACCATGGTGCTGCTCGAGCTGTCGGAGGCTGTGCAATTTATGTCAGTGACAAGCCAGGGGTTCATAACTTTGATCTACTGAAAAAGCTAGTCCTCCCTGATGGATCTGTTTTGCGTGCGCAACTGCCTGGAAGACCGACGCGGGACTGTCTCTTCGTAGATCCAGCCAGAGACGGGAAAAGCTTGCTGAAAATATGGAACCTAAATAAATATACTGGAGTACTGGGTATCTTTAATTGCCAAGGAGCAGGATGGTGCAAAGTTGAAAAGAAGAATCGTATTCATGATTCATCTCCGATGACCTTAAGTGGTAGTGTGCGTGCTCAAGATGTTGACTTCCTTCCACAAATTGCTGGTGATGGTTGGAATGGAGATACTGTAATCTACGCTCATAGAGCAGGAGAGCTTGTTCTACTTCCAAAAGGTGCTGCCATACCTGTTACGTTGAAAGTGCTTGAGTTTGAGCTTTACACGGTGACTCCCGTCAAGGACGTTGCATGTGGTATCTCCTTTGCTCCTGTCGGACTAATTAACATGTTCAACTCTGGTGGCGCAATTGATGAATTCGACATACATACAGATTCCCAAAACCCTGAACTAAGTGGTTCTCTGACAGTTGATATCAGAATGAAAGTTCGTGGGTGTGGTACATTTGGAGCATATTCCACGCATAAACCAAAGAAGTGTTCTGTTGATTCATGTGAAACAGAATTCACATATGACTCTGCAAGTGGTCTTCTGACATTTGCAATTCCTATTTCAAAAGAAGAAATGTATAGGTGGGATGTTAAAATTGAAATTTAA___GTGACAGGTTTGATCCTCTCACTTAATCATCATCTTATTCTACCAAAAGATGCATCTATTATGCCAGTGGGAACATACAAATCTCCCGTGAGGGAGATGATCACAGGAAAGTCTCCTATTATCCCAATGGGAACATACAAATCTCCCTCGAGGGAGGAGATGATCACAGGAAAATCTCCCTGATTTCTTGGCCGGCCAATGAGACGGGGAATATGATGATCTGTCAAAGCAATGTTGCTATGCAGTTAGGCACCTCGTACTGTTATCTTCGTCATGTATTTTCCTCTGTTATGACGTCATGTATTTTCCTCTCTTATGATAGGAAAGAGGTACTGCATCACTTTACATTTTTTAGATTTCTTGTTGCATAGGTAGGTTTATGTTTACCAATTTCCTCTTGTCGAGCGTCTCTTTCTGTCACACCACTGGTGTCGTATATTTGAAAGGTCTTATCAAGACTTCCAGGGTGGGGACAAAGGAGGGTTAAATCTGTCACAGGATTTACTCGAGTCTATGGAGACCTTATCTTTATTTTAGTAATAAAAAATAAAGATCTGTTCAGCTCTCTTTCCTGGCATCATGTTTAGTGGTCAAACTCTTCATTTTAAATATGCAAGCAAATAAGTGAATAAAATTCATAGCAGAATGGAATAATGAAACAGTGTTTTGGGCTGAATTAAACCC

Fln Alignment:

sp_v1.1_unigene3641___LEASIVRNFPDNGCIACMCHNTDGLYSAKQTAVIRASDDFFPSDPASHTIHISSVAYNTLFLGEFMQPDWDMFHSLHPAAEYHGAARAVGGCAIYVSDKPGVHNFDLLKKLVLPDGSVLRAQLPGRPTRDCLFVDPARDGKSLLKIWNLNKYTGVLGIFNCQGAGWCKVEKKNRIHDSSPMTLSGSVRAQDVDFLPQIAGDGWNGDTVIYAHRAGELVLLPKGAAIPVTLKVLEFELYTVTPVKDVACGISFAPVGLINMFNSGGAIDEFDIHTDSQNPELSGSLTVDIRMKVRGCGTFGAYSTHKPKKCSVDSCETEFTYDSASGLLTFAIPISKEEMYRWDVKIEI
D5AEI9______________MEASIARNFPDNGIISCMSHNTDGLYSSKQTAVIRASDDFWPRDPASHTIHIASVAYNSVFLGEFMQPDWDMFHSLHPMAEYHAAARAVGGCSIYVSDKPGEHDFDLLKKIVLPDGSLLRAQLPGRPTKDCLFTDPARDGTNLLKLWNLNKHTGVLGVFNCQGAGWCRVDKKNLIHDSQPKTISGAIRSMDVDYLPEIADENWDGDSIVYSHRGGELVCLPKSAALPITLKAREYEVFTIVPLKWLSNDISFAPIGLIKMFNSGGAISAYWFYQN----------TSTVYLKVRGCGDFGAYCSVMPEAVYVDSTETEFSYQEECRLISFTLRVPETELYLWDIRIKI

SNPs (tot: 18)

Position	A %	C %	G %	T %	Probability
38		80		20	0.995493
771	10	89			0.999919
1234	92		7		0.999532
1447		5		92	0.999982
1525	96		3		0.984346
1560			2	97	0.979771
1561			4	95	0.999984
1592		4	1	94	0.999876
1708			75	25	0.997389
1711	57		42		1.0
1714		14		85	0.994477
1951		8		91	0.999766
2074	34	65			1.0
2100	75			6	1.0
2121	12			87	0.992554
2122	12			87	0.992554
2123	12			75	0.975346
2124	12	87			0.992554

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain