SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene3638

Length: 1820 nt

Origin of reads: Biogeco_1 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene3638

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Unassigned protein	-	-	74%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	85%
Blast2go	unknown [Picea sitchensis]	-	-	90%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NVT1

Fln msg:

Fln protein: MATAIGEREGGAKSGDKEKNSNSENANKMSVLAKGESSTDMFTGAFASGSVIGGAAGLLMHLRAGSGAFEWKAVPYSMARGALAFGSALGIYEATNCKFKQTGVMGDLPSSTVAGGIGTGVGGFLFSAFPWTRPNSTKIYAEKFKQFQREIPKNFAKYVAIGGVYFGLESVILSKYFPDQQR*

Protein Length: 184

Fln nts: TTATTAAGAAATAACAATTTAAAAGCCCCGCTGCTTTGTAGGATTGGGACGGTTATTTTTCAGGTCGATAGCACAGTTTTGCTTTACGTGTTTGTAAATCCTTCCGCCTAAACTTAAACGCACTGGTTTTTCTTTTGGTTTGGCAGGAAAGCCATCTGCGTGGCTTAATGACACGGTTCAAGTCAAATGACATTGAAGTCGTATTGTATCAAAATTAAAATTCCTTCCATTCCCCTGTAAATCAATATGTTGACTATGATCTTGCTCTCTTAACAAGACGTAGTCTGCCATTATAGAAAATATCTGCGAACAACATTAACCGGGTCTCCTTTGTTTCTTCTCCCTAGAATCGCTCTTTGTGTCTGTGATTTCTCATCCTTCTTC_-_ATGGCCACCGCCATTGGAGAGAGGGAAGGAGGCGCCAAATCTGGTGATAAAGAAAAGAATTCTAATAGCGAAAATGCCAATAAAATGTCAGTGTTGGCAAAGGGTGAGAGCTCGACAGACATGTTCACTGGAGCATTCGCTAGCGGGTCCGTAATCGGAGGAGCAGCAGGGCTACTCATGCACTTGCGTGCAGGTTCCGGTGCTTTTGAATGGAAGGCAGTTCCATATTCTATGGCAAGAGGTGCTCTAGCATTTGGATCTGCACTTGGAATCTATGAAGCAACTAATTGCAAGTTTAAGCAAACAGGGGTCATGGGCGATCTACCGAGCTCTACTGTAGCTGGAGGCATAGGTACAGGTGTAGGTGGCTTTCTATTTAGTGCATTTCCATGGACAAGGCCAAATTCAACAAAGATATATGCGGAGAAATTCAAACAGTTTCAAAGGGAGATACCCAAAAATTTTGCCAAATATGTAGCAATTGGTGGAGTTTACTTTGGTCTGGAATCTGTAATTCTGTCAAAATATTTTCCTGATCAACAACGTTAG___CATTTTGACCAGAATCTTGGTCCCACCCACAAAGTTTCCGGACTCCGATCTCAATAGAAACCGATATTTCGTCCTTTTCATGCAGAAGGTACCGTTTATTTTTTCAATGAGAATAGCAATTCTGTCAGTTTCTTGCTTTTGAGCTCATCTATTGCTCTTCCCTAAATAGTTCGTCTACAATCATATCCCGTCTAAGAGAATCTCATGTGCACAATATCCTTCATGATGGATCTACATGCACGCGTAGGCATACAATACTACTTTTTGTGATGAGTGGTTGCTATTAATGGGTGGCCATTATCACTGGATTATCAGTGACAAGTCATGACTGCTGAAAGTAGTGTTTTGTTCAAAACACTGAACGAGTGGATATATGAGCTTGCCATGTGGAAGTACACTTTTTATGGAGTCGAAAGATGTCAAATTTTTGTGACAGAAAGCATTGCTCATTCAGAACGGTAAGAAAACTTGTACTTGAATAACAAAGGCAACAATTTGAAAATAAGATTCAAGAAGAGCTGGAAATCTCTGCTTTGATTTGGCTCAACGTTTAGTTCTCTGTACTGTAAAATTGTGCACACACAATACTATACAGAATGTCACCGAGAGGAGATGATTATTATTCAAGGCGAGTAAAATGAGACACACAAATAATATACCTCGTGGGAGAGATATTTTGGTGGAAACCAACATTATGTAACTAAAAGCGGCTGGCAATTATTTACATGTCACGTTTCTTTGCCTCTAAGTCAATAGTATTGTTAGTATAAAATTTGAATACAATATAATATGGCTGTTATACTATGTATGCTTTATCACCCTTAATGGCCATATGTGAAAGTACACAAGCTTATTCCTAAACTTACTATACTTATTTGGACTGAGAG

Fln Alignment:

sp_v1.1_unigene3638___MATAIGEREGGAKSGDXXXXXXXXXXXXMSVLAKGESSTDMFTGAFASGSVIGGAAGLLMHLRAGSGAFEWKAVPYSMARGALAFGSALGIYEATNCKFKQTGVMGDLPSSXXXXXXXXXXXXFLFSAFPWTRPNSTKIYAEKFKQFQREIPKNFAKYVAIGGVYFGLESVILSKYFPDQQ
A9NVT1______________MATAIGVKEGGAKSGDKENNSNSENANKMSEMAKGECSLDTFTGALARGSVIGGAAGLLMQLRAGSGAFSLKAVPYSMVRGALAFGSALGVYEATNCKLTQAGVMGDLSSSTVAGGVGTGLGGILFSAFPWTRPNSTKMYAEKFKQFQREIPKNFAKYAAIGGVYFGLESIVLSKYFPDQQ

SNPs (tot: 63)

Position	A %	C %	G %	T %	Probability
295		20		80	0.999996
296	80		20		0.999996
298	80	20			0.999996
300	10			20	0.999998
301	70		20		0.999998
303	80	20			0.999996
304	80	20			0.999996
306	10			20	0.999998
307	80		20		0.999996
308			20	80	0.999996
313	20		80		0.999996
314	80	20			0.999996
315	80			20	0.999996
331		90		10	0.90298
335	11			88	0.923564
336			11	88	0.923564
339	14			85	0.993533
340			14	85	0.993533
342		87	12		0.992554
343	12			87	0.992554
344		12		87	0.992554
345	12	87			0.992554
346			12	87	0.992554
347		87	12		0.992554
637			14	85	0.993533
638	85			14	0.993533
640	14	85			0.993533
641	85	14			0.993533
642		14		85	0.993533
647	85	14			0.993533
649		85	14		0.993533
656	14			85	0.993533
853		14		85	0.993533
1008		33		66	1.0
1009			33	66	1.0
1012		66	33		0.997452
1014			33	66	0.997452
1015	33			66	0.997452
1016		33		66	0.997452
1018	66			33	0.997452
1024	66	33			0.997452
1025	66			33	0.997452
1027			66	33	0.997452
1028		33		66	0.997452
1031		66		33	0.997452
1032		33	66		0.997452
1033	33			66	0.997452
1203	20			80	0.995493
1206			25	75	0.996473
1226		80		20	0.995493
1473			16	83	0.994512
1475	50	16	33		1.0
1477			16	83	0.994512
1479		16	66		0.988813
1480	16		83		0.994512
1483		88		11	0.923564
1484	88	11			0.923564
1489		11		88	0.923564
1490	11			88	0.923564
1508	11		88		0.923564
1520	11	88			0.923564
1523	22		77		0.999999
1566			83	16	0.994512

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain