SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene3624

Length: 2278 nt

Origin of reads: Biogeco_1 Biogeco_2 Uma

UniGene Fasta

>sp_v1.1_unigene3624
GGCCCGATTCCCGACTCTCTGGGCAAATGCAATTCTCTGGTTAAAGTCCGCTTGGGGCAAAATTATTTGAATGGTTGGATTCCTCAAGGCTTGCTTTACATGCCCAATCTGACTATGATAGAATTGCACAATAATTATCTCAGTGGGAGCATACCAGAGGGATCAATTAACAATGGATCCTCTGTGCTAGGGTTGATGAAGCTTTCTAATAATCGGTTCAGTGGGCCTCTTCCTTCATCCATAGGTAAATTAACTTCTGTGCAAAATGTTCTTCTCAATGGAAATCGGTTAACAGGGAATGTTCCACTAGAGATTGGCCAACTGGGGAAGGTTTCTAAGATTGATCTCAGCAACAACAGATTTTCTGGTATGATTCCCAAGGAGATTAGCCACTGTACTGTTCTGACATATCTTGATCTCAGCCAGAACGAGTTCAGTGGTCCCATCCCAGTGGAAATCACGAGGATGCGCATTCTGAACTATGTGAACTTATCGTTTAGAAATCACCTGAACGGGAGCCATTCCAAGAGAATTTGAGAACATGCAAAGTTTGTCTTCTGCAGATTTCTCTTACAATAATCTTTCAGGCCTTGTTCCAGAGAATGGTCTGTTTTCTTTGTTCAAAGCAAGCTCTTTTACAGGGAATCCAAACTTATGTGGACCACACTTGGACCCTTGCTCAATTGGGTCACCAATACAAGCCCACATCAAGGGCCGGGCTTCTCCCCCTTTGAAGCTTGTTTTAGCTCTGGGACTACTCCTCTGCTCGTTTGTTTTCGCGATTGGGGCCGTCCTTAAGGCCAGAGCCCTAAAGAAAGAGCGCGACGCAGGGTCCCTGAAAATGACAGCCTTCCAGAAACTCAACTTTGGAGGCGATGATGTCTTGGAATGCATAAAAGAGGACACCGTGATAGGCAGAGGAGGAGCGGGAATTGTGTACAGAGGCATCATGCCCAATGGGGAAGAAGTTGCAGTGAAGAAACTCATGGGCATTGGCAGCAGCCAAGACTCTTCACATGATCATGGTTTCTCTGCAGAAATCCAGACTCTGGGCAGCATCCGCCATCGCCACATAGTTAGATTGCTGGCGTTTTGTTCCAATCAGGACACCAATCTTCTGGTGTATGAATACATGCCCAATGGAAGCCTGGGCGAGCTGCTTCATGGAAACAAAGGCGGGCATTTGCATTGGCATACCAGATACAAAATTGCACTCGAGGCAGCCAAGGGGTTATGCTATCTTCACCATGATTGCTGCCCACTGATTGTTCATCGCGACGTGAAATCCAACAACATTCTTCTCGACTCCAACTTTGAAGCCCATGTTGCAGATTTCGGCCTTGCCAAGTTCTTGCAGGATTCTGGTACCTCTGAATGCATGTCTGCCATTGCAGGATCCTATGGCTACATTGCTCCAGAATACGCTTACACTCTGAAAGTGGACGAGAAGAGCGACGTATACAGCTTCGGGGTGGTTTTGCTTGAGCTGATTACTGGCAGAAAACCAGTGGGCGAAAGCGAATTTGGAGAGGGCGTGGACATCGTGCAGTGGGTGAAGAAAACGAGCAACTCGAAGAGAGAAGCAGTTCAGAAGATTATTGATCCCCGTCTCAGCACCTTTCCTCTGGAGGAGGCCATGCATATTTTCTTCGTGGCTCTGCTCTGCGTTGAAGAGCAAAGTGTGCAGAGACCCACAATGCGAGAAGTAGTGCAGATGCTAACAGATTCTCCAAAGGGTAAGCCCAATATGCAGAGTTTTTCGGTTTCGCCTGCCCATGGAAAGGAATCGAACAAGCCACTCTCCAGCCCGCCACCCGATCTCCTCAGCATATAAGCTGAATACGTACGTACCTGCTTTGGTCATAATTAATTTTCACATTCTGCCAATTTTTGCATGCAGTACTAAGTAGTTGCAATCTTCATCCCATAGTTACTCCTATTGTTCACTAATCTATTGTCTCTGTTATGCTAAATGGTCTGGATTCCCAGTATTTTGGAAACCAGGCTCTAAATAGGTGAGGATTAGGTAACATCCATAAGTGTCATTGCAATGTGTTTGGTCTGGATTCCCAGTATGTTGGAGACCAGGCTATAAATAGGTCAGGGTCATGTAACGTCCCACAAGTGTCATTGCAATATGTTTTCTTCAATCAAATAAGGTAGTTTTAGTGATTGTGAAAATGGGTCATGTAACGTCCCACAAGTGTAATTGCAATATGTTTTTTCTATCAAGCAGTATTAAATAAGATATTTTTCATGATTTTGAGAGGATGGATGC

Ace file of the UniGene sp_v1.1_unigene3624

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Receptor-like protein kinase n=2 Tax=Glycine max RepID=C6ZRW9_SOYBN	-	-	70%
FL-Next	tr=Clavata-like receptor; Picea glauca (White spruce) (Pinus glauca).	-	-	28%
Blast2go	receptor protein kinase-like protein	-	-	82%

Source	ECs	Term	Type	e value	Identity
Blast2go	Beta-amylase.	EC:3.2.1.2	-	0.0	82%

Source	KEGGs	Term	Type	e value	Identity
Blast2go	Starch and sucrose metabolism	00500		0.0	82%
Blast2go	Metabolic pathways	01100		0.0	82%

Source	GOs	Term	Type	Identity
Blast2go	response to water deprivation	GO:0009414	Biological Process	82%
Blast2go	regulation of meristem growth	GO:0010075	Biological Process	82%
Blast2go	gametophyte development	GO:0048229	Biological Process	82%
Blast2go	starch catabolic process	GO:0005983	Biological Process	82%
Blast2go	regulation of meristem structural organization	GO:0009934	Biological Process	82%
Blast2go	microsporocyte differentiation	GO:0010480	Biological Process	82%
Blast2go	beta-amylase activity	GO:0016161	Molecular Function	82%
Blast2go	kinase activity	GO:0016301	Molecular Function	82%
Blast2go	cytosol	GO:0005829	Cellular Component	82%
Blast2go	chloroplast	GO:0009507	Cellular Component	82%
Blast2go	nucleus	GO:0005634	Cellular Component	82%

Source	InterPros	Term	Type	Identity
Blast2go	Protein kinase, catalytic domain	IPR000719	-	82%
Blast2go	Serine/threonine- / dual-specificity protein kinase, catalytic domain	IPR002290	-	82%
Blast2go	Serine/threonine-protein kinase, active site	IPR008271	-	82%
Blast2go	Protein kinase-like domain	IPR011009	-	82%
Blast2go	Serine/threonine-protein kinase-like domain	IPR017442	-	82%
Blast2go	Tyrosine-protein kinase, catalytic domain	IPR020635	-	82%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: Q19AV8

Fln msg: Warning!, your query overlaps and the subject is separated, your sequence is shorter than subject: 612 - 998

Fln protein: GPIPDSLGKCNSLVKVRLGQNYLNGWIPQGLLYMPNLTMIELHNNYLSGSIPEGSINNGSSVLGLMKLSNNRFSGPLPSSIGKLTSVQNVLLNGNRLTGNVPLEIGQLGKVSKIDLSNNRFSGMIPKEISHCTVLTYLDLSQNEFSGPIPVEITRMRILNYVNLSFRNHLxxxxIPREFENMQSLSSADFSYNNLSGLVPENGLFSLFKASSFTGNPNLCGPHLDPCSIGSPIQAHIKGRASPPLKLVLALGLLLCSFVFAIGAVLKARALKKERDAGSLKMTAFQKLNFGGDDVLECIKEDTVIGRGGAGIVYRGIMPNGEEVAVKKLMGIGSSQDSSHDHGFSAEIQTLGSIRHRHIVRLLAFCSNQDTNLLVYEYMPNGSLGELLHGNKGGHLHWHTRYKIALEAAKGLCYLHHDCCPLIVHRDVKSNNILLDSNFEAHVADFGLAKFLQDSGTSECMSAIAGSYGYIAPEYAYTLKVDEKSDVYSFGVVLLELITGRKPVGESEFGEGVDIVQWVKKTSNSKREAVQKIIDPRLSTFPLEEAMHIFFVALLCVEEQSVQRPTMREVVQMLTDSPKGKPNMQSFSVSPAHGKESNKPLSSPPPDLLSI*

Protein Length: 613

Fln nts: GGCCCGATTCCCGACTCTCTGGGCAAATGCAATTCTCTGGTTAAAGTCCGCTTGGGGCAAAATTATTTGAATGGTTGGATTCCTCAAGGCTTGCTTTACATGCCCAATCTGACTATGATAGAATTGCACAATAATTATCTCAGTGGGAGCATACCAGAGGGATCAATTAACAATGGATCCTCTGTGCTAGGGTTGATGAAGCTTTCTAATAATCGGTTCAGTGGGCCTCTTCCTTCATCCATAGGTAAATTAACTTCTGTGCAAAATGTTCTTCTCAATGGAAATCGGTTAACAGGGAATGTTCCACTAGAGATTGGCCAACTGGGGAAGGTTTCTAAGATTGATCTCAGCAACAACAGATTTTCTGGTATGATTCCCAAGGAGATTAGCCACTGTACTGTTCTGACATATCTTGATCTCAGCCAGAACGAGTTCAGTGGTCCCATCCCAGTGGAAATCACGAGGATGCGCATTCTGAACTATGTGAACTTATCGTTTAGAAATCACCTGxxxxxxxxxxxxATTCCAAGAGAATTTGAGAACATGCAAAGTTTGTCTTCTGCAGATTTCTCTTACAATAATCTTTCAGGCCTTGTTCCAGAGAATGGTCTGTTTTCTTTGTTCAAAGCAAGCTCTTTTACAGGGAATCCAAACTTATGTGGACCACACTTGGACCCTTGCTCAATTGGGTCACCAATACAAGCCCACATCAAGGGCCGGGCTTCTCCCCCTTTGAAGCTTGTTTTAGCTCTGGGACTACTCCTCTGCTCGTTTGTTTTCGCGATTGGGGCCGTCCTTAAGGCCAGAGCCCTAAAGAAAGAGCGCGACGCAGGGTCCCTGAAAATGACAGCCTTCCAGAAACTCAACTTTGGAGGCGATGATGTCTTGGAATGCATAAAAGAGGACACCGTGATAGGCAGAGGAGGAGCGGGAATTGTGTACAGAGGCATCATGCCCAATGGGGAAGAAGTTGCAGTGAAGAAACTCATGGGCATTGGCAGCAGCCAAGACTCTTCACATGATCATGGTTTCTCTGCAGAAATCCAGACTCTGGGCAGCATCCGCCATCGCCACATAGTTAGATTGCTGGCGTTTTGTTCCAATCAGGACACCAATCTTCTGGTGTATGAATACATGCCCAATGGAAGCCTGGGCGAGCTGCTTCATGGAAACAAAGGCGGGCATTTGCATTGGCATACCAGATACAAAATTGCACTCGAGGCAGCCAAGGGGTTATGCTATCTTCACCATGATTGCTGCCCACTGATTGTTCATCGCGACGTGAAATCCAACAACATTCTTCTCGACTCCAACTTTGAAGCCCATGTTGCAGATTTCGGCCTTGCCAAGTTCTTGCAGGATTCTGGTACCTCTGAATGCATGTCTGCCATTGCAGGATCCTATGGCTACATTGCTCCAGAATACGCTTACACTCTGAAAGTGGACGAGAAGAGCGACGTATACAGCTTCGGGGTGGTTTTGCTTGAGCTGATTACTGGCAGAAAACCAGTGGGCGAAAGCGAATTTGGAGAGGGCGTGGACATCGTGCAGTGGGTGAAGAAAACGAGCAACTCGAAGAGAGAAGCAGTTCAGAAGATTATTGATCCCCGTCTCAGCACCTTTCCTCTGGAGGAGGCCATGCATATTTTCTTCGTGGCTCTGCTCTGCGTTGAAGAGCAAAGTGTGCAGAGACCCACAATGCGAGAAGTAGTGCAGATGCTAACAGATTCTCCAAAGGGTAAGCCCAATATGCAGAGTTTTTCGGTTTCGCCTGCCCATGGAAAGGAATCGAACAAGCCACTCTCCAGCCCGCCACCCGATCTCCTCAGCATATAAGCTGAATACGTACGTACCTGCTTTGGTCATAATTAATTTTCACATTCTGCCAATTTTTGCATGCAGTACTAAGTAGTTGCAATCTTCATCCCATAGTTACTCCTATTGTTCACTAATCTATTGTCTCTGTTATGCTAAATGGTCTGGATTCCCAGTATTTTGGAAACCAGGCTCTAAATAGGTGAGGATTAGGTAACATCCATAAGTGTCATTGCAATGTGTTTGGTCTGGATTCCCAGTATGTTGGAGACCAGGCTATAAATAGGTCAGGGTCATGTAACGTCCCACAAGTGTCATTGCAATATGTTTTCTTCAATCAAATAAGGTAGTTTTAGTGATTGTGAAAATGGGTCATGTAACGTCCCACAAGTGTAATTGCAATATGTTTTTTCTATCAAGCAGTATTAAATAAGATATTTTTCATGATTTTGAGAGGATGGATGC

Fln Alignment:

sp_v1.1_unigene3624___GPIPDSLGKCNSLVKVRLGQNYLNGWIPQGLLYMPNLTMIELHNNYLSGSIPEGSINNGSSVLGLMKLSNNRFSGPLPSSIGKLTSVQNVLLNGNRLTGNVPLEIGQLGKVSKIDLSNNRFSGMIPKEISHCTVLTYLDLSQNEFSGPIPVEITRMRILNYVNLSFRNHLNGSxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxTGAIPREFENMQSLSSADFSYNNLSGLVPENGLFSLFKASSFTGNPNLCGPHLDPCSIGSPIQAHIKGRASPPXXXXXXXXXXXCSFV-FAIGAVLKARAL--------KKERDAGSLKMTAFQKLNFGGDDVLECIKEDTVIGRGGAGIVYRGIMPNGEEVAVKKLMGIGSSQDSSHDHGFSAEIQTLGSIRHRHIVRLLAFCSNQDTNLLVYEYMPNGSLGELLHGNKGGHLHWHTRYKIALEAAKGLCYLHHDCCPLIVHRDVKSNNILLDSNFEAHVADFGLAKFLQDSGT-SECMSAIAGSYGYIAPEYAYTLKVDEKSDVYSFGVVLLELITGRKPVGESEFGEGVDIVQWVKKTSNSKREAVQKIIDPRLSTFPLEEAMHIFFVALLCVEEQSVQRPTMREVVQMLTDS---PKGKPNMQSFSVSPAHGKE
Q19AV8______________GEIPETLGNLAELTNLDLSINRLSGSIPESITKLDKVAQIELYQNLLSGPIPVAM--GELKALKRFDASMNMLNGSIPAGLGSL-NLESLNLYQNDLVGEIPPGLGSFASLTELKLFSNRLTGRLPESLGRYSDLQALDIADNLLSGSLPPDLCKNKKLEILSI-FNNVFAGNxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxTGLIPSEFGNLK-LNTFDVSNNRLSGAVPLAFANPVYE-KSFLGNPELCSR--EAFNGTKSCSEERSERAKRQSWWWLLRCLFALSIIIFVLGLAWFYRRYRNFANAERKKSVDKSSWMLTSFHRLRFSEYEILDCLDEDNVIVSDGASNVYKATLNNGELLAIKRLWSIYKT-NASNDNGFQAEVDTLGKIRHKNIVKLWCCCSKSDSNLLVYEYMPNGSLGDLLHGPKASVLDWPIRYKIALGAAQGLAYLHHGCVPAIVHRDVKSNNILLDEDYVAHVADFGVAKILQSCARGADSMSAIAGSYGYIAPEYAYTLKVNEKSDIYSFGVVILELVTGRRPV-DPEFGENKDLVKWL-CNKIEKKNGLHEVLDPKLVDCFKEEMTMVMRVGLLCTSVLPINRPSMRRVVEMLQEANPHHKAKATGKDGKLSPYYCEE

SNPs (tot: 9)

Position	A %	C %	G %	T %	Probability
1680	90			10	0.90298
1682			10	90	0.90298
1958		11	88		0.999937
2103		85		14	0.999981
2168	11			66	0.999999
2169	88		11		0.923564
2170			88	11	0.923564
2227		33		66	1.0
2228		66		33	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain