SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene3607

Length: 1515 nt

Origin of reads: Biogeco_1

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene3607

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	TRANSPARENT TESTA 1 protein, putative n=1 Tax=Ricinus communis RepID=B9RIA2_RICCO	-	-	70%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	72%
Blast2go	transparent testa 1	-	-	77%

Source	GOs	Term	Type	e value	Identity
Blast2go	pollen tube growth	GO:0009860	Biological Process	0.0	77%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NQR7

Fln msg: your sequence is longer than subject: 357 - 225

Fln protein: MNTRSYNPKSGSNFSTITTQYPISFTEWLKTSVPSGKVPNSYQDTFPRTASNTPYLDLASANPNYSMTESYINPSSSSSLKLDQYPFLCCKPPERCDSPPLREVLPLLSLSPPRPSEMASLHADAPEFERDEDVTVALQIGLPNTGTSYSNKRLNSDSADTADMENLQQGSRRILSEGHYWIPTPSQILIGPTQFSCPVCSKNFNRYNNMQMHMWGHGSQYRRGPESLRGTQPTAMLRLPCYCCAEGCRNNIDHPRAKPLKDFRTLQTHYKRKHGTKPFMCRRCGKAFAVRGDWRTHEKNCGKLWFCICGSDFKHKRSLKDHIRAFGHGHAPHHGDLHTFEDEDPASEIEQDDETQ*

Protein Length: 358

Fln nts: CGATGTTAGATGAGACCCACCTTGTCGGGAGTGAGATACATAGCCACATATGGAGAGACAGAACATCATGGGCTCCGTGGGGGCATTGCAAACCCTAATGGTAGGTACTTCTGACTGAATTCTGAAGCCTTTTAGCTTCAAGCTCCTCAGTTTTCGTGTTCTATTATCGGTGATCTCCAGCAGAACTGTTTAAGCTTCCATATGTCTGGTTTCAGCTCCCCTACGCTATGTTTCGGTGGCTCTGAGAAAGTTGAaGctgGAATCCAAGAACGCAGAATGCTTGGGCACAGCAACAGAAAACAAATAGCTGATAATCATCAAGAACCATAGCTTCAAATTCATTGTCAGATCTTGAAGGCTTGGGATCAGTCTGTCAATTTGTTTGGAGTTCTGTGACAAAGAAAGG_-_ATGAATACAAGAAGCTACAACCCTAAGAGTGGGAGTAATTTCAGTACCATAACAACCCAGTATCCTATTTCCTTCACCGAATGGCTGAAGACTTCGGTCCCATCAGGAAAGGTACCTAATTCCTATCAGGATACTTTTCCCCGAACTGCCAGTAACACTCCTTACCTGGACTTAGCCTCAGCCAATCCTAATTATTCCATGACAGAATCATATATTAACCCATCATCTTCATCTTCGTTAAAGCTGGATCAGTATCCTTTCTTGTGCTGCAAACCTCCTGAACGCTGTGATTCTCCTCCTCTACGTGAAGTGCTTCCATTGCTGAGCCTCAGCCCTCCAAGGCCCTCAGAAATGGCTTCCCTACATGCAGATGCTCCAGAGTTCGAAAGGGACGAGGATGTTACTGTAGCTCTGCAAATTGGCCTTCCCAATACCGGCACCAGTTACTCCAACAAGCGCTTGAACTCCGATTCCGCAGATACAGCTGATATGGAAAATTTGCAGCAAGGCAGCAGAAGAATTCTCTCAGAAGGGCACTACTGGATACCGACTCCCTCACAGATTCTCATCGGCCCTACACAATTCTCATGTCCAGTCTGTAGCAAGAACTTCAACCGGTATAACAACATGCAGATGCATATGTGGGGGCATGGCTCTCAGTACAGAAGAGGGCCAGAATCTCTACGAGGTACACAGCCCACAGCAATGCTGAGGCTTCCATGTTACTGCTGTGCTGAAGGTTGCAGGAACAATATCGACCATCCCCGTGCAAAACCGCTGAAGGACTTTCGTACCCTACAGACTCACTACAAGCGCAAGCACGGCACCAAGCCCTTCATGTGTCGTAGGTGTGGAAAGGCATTTGCTGTGCGGGGTGACTGGCGAACGCACGAGAAAAACTGCGGAAAGCTTTGGTTTTGTATCTGTGGTTCGGATTTCAAGCACAAAAGGTCACTCAAGGATCACATAAGAGCATTCGGTCATGGCCATGCTCCTCATCATGGAGATCTGCACACTTTTGAAGATGAGGACCCCGCCTCTGAAATTGAACAGGACGATGAAACGCAGTGA___CCCATACCAGCAAAATTATGATCTGATCCCATGTACGG

Fln Alignment:

sp_v1.1_unigene3607___VALQIGLPNTGTSYSNKRLNSDSADTADMENLQQG---SRRILSEGHYWIPTPSQILIGPTQFSCPVCSKNFNRYNNMQMHMWGHGSQYRRGPESLRGTQPTA-MLRLPCYCCAEGCRNNIDHPRAKPLKDFRTLQTHYKRKHGTKPFMCRRCGKAFAVRGDWRTHEKNCGKLWFCICGSDFKHKRSLKDHIRAFGHGHAPHHGDLHTFEDEDPASEIEQDDE
A9NQR7______________VSLQIGPPNSLSEKSELTLKSTDSSDADKESIVQPRSEGRTRFSESQYWIPTPSQILIGATQFSCPVCAKTFNRYNNMQMHMWGHGSQYRKGPESLRGTQPTAILLRLPCYCCTQGCRNNIDHPRAKPLKDFRTLQTHYKRKHGIKPFMCCKCNKTFAVRGDWRTHEKNCGKLWYCSCGSDFKHKRSLKDHIRAFGQGHAPIAPD--SFEDEE---DLGSEDE

SNPs (tot: 2)

Position	A %	C %	G %	T %	Probability
1193		25		75	0.996473
1203		25		75	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain