SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene3605

Length: 1579 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v1.1_unigene3605 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	mucin-like protein [Oryza sativa Japonica Group] gb\|AAP54868.1\| Strictosidine synthase family protein, expressed [Oryza sativa (japonica cultivar-group)] gb\|EAZ16859.1\| hypothetical protein OsJ_32333 [Oryza sativa Japonica Group]	-	-	44%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	86%
Blast2go	unknown [Picea sitchensis]	-	-	67%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Six-bladed beta-propeller, TolB-like	IPR011042	-	0.0	67%
Blast2go	Strictosidine synthase, conserved region	IPR018119	-	0.0	67%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LRM9

Fln msg:

Fln protein: MANPTIAVVAAALCIALAAAWTALLRNSPIDAANIELPRPPQRLGVFAHNKRLQNAHKLGSGLIPNPEDLVFDSHGRLYTGCGDGWIKRISFLDNLDVLVENWTYVGGRPLGLAFGSHGELLVCEPSQGLLNVTEGHVEILTDEADGLKFKLADGVDVSREGAVYFTDASYKYGFHNHLLDLLEYRPHGRLLKYEASTKTTSVLLKDLYFPNGVALSAKQDFLVFCETSLYRCQKYWLEGPEKGTVESFIDNLPGLPDNIHYDGNGTFWIGVPTSRTLTWTIATKFQSVRHVFALMATLAPGAVTDAIVDEPGVLAVNEMGDPIALYSNPNSKNQINTGLKRGDSLYSASLTLDYIGRVPLTQEIPIN*

Protein Length: 370

Fln nts: CGTCGTGACCTTGGCTGTCACTCAATAACTCAAACGTTTGTATAAGACATTTATGGAATCTTCACTTTACGATTGAATTCCATGTTTTGTAACGTGTGAAGCTTTTATCCCTCTCCTCTTCTAGTCGTTCACATGTGACGATCTATATGTAGCCTCTGTACTCTCTGTTCCAGAGTCTTCGCCCTCTCTTTTGTG_-_ATGGCAAATCCCACGATTGCAGTGGTAGCGGCTGCGCTATGCATAGCTTTAGCAGCAGCTTGGACGGCTCTCCTCAGAAATTCTCCAATCGATGCAGCAAACATCGAGCTTCCTCGTCCTCCCCAAAGACTTGGCGTATTCGCCCACAACAAGAGGCTACAGAATGCACACAAACTTGGATCTGGACTCATCCCCAACCCAGAAGATCTGGTTTTCGATTCTCATGGCAGACTGTATACTGGTTGTGGGGATGGGTGGATAAAGCGAATCTCCTTTCTAGATAACCTTGATGTTCTAGTGGAGAACTGGACATATGTTGGAGGTCGTCCTCTGGGCCTCGCTTTTGGCAGCCATGGAGAATTATTAGTCTGTGAGCCTTCTCAGGGTCTGCTAAATGTGACGGAAGGCCATGTGGAGATTCTGACAGATGAAGCAGATGGCTTGAAATTCAAACTTGCAGACGGAGTGGATGTAAGCAGAGAAGGGGCAGTTTATTTCACCGATGCCTCATATAAATATGGGTTCCATAACCACTTATTAGATCTCTTGGAGTACCGACCACACGGCCGATTGCTCAAATACGAGGCCTCCACCAAGACAACTAGCGTGCTGCTAAAAGATCTTTACTTCCCCAACGGAGTGGCCCTCTCTGCCAAACAGGACTTCCTCGTCTTCTGTGAAACTTCACTGTATCGCTGCCAGAAGTACTGGTTAGAGGGGCCAGAAAAGGGCACCGTCGAATCTTTCATTGACAATCTGCCTGGACTTCCAGATAACATCCATTATGACGGGAACGGCACCTTCTGGATCGGAGTTCCGACGAGCCGAACCTTAACCTGGACAATCGCAACGAAGTTCCAGTCTGTGAGGCACGTGTTCGCTCTGATGGCGACATTGGCGCCAGGTGCAGTCACGGATGCTATAGTTGATGAGCCAGGTGTTTTGGCTGTGAATGAGATGGGCGATCCGATTGCGCTGTACTCCAATCCGAATTCCAAAAATCAAATAAATACAGGATTGAAGAGGGGAGACTCTCTGTACTCTGCATCTCTTACTCTGGATTACATTGGACGTGTTCCTCTCACACAAGAGATACCAATAAATTAA___AATTTGGTCTCAGGTATACATAGTCATAAGACATGTTTATATGGACCATATCCTGAGCTTGATGGGGATTTGCAAAGCCTGTTTTCAAATTTCAGAACAGAGCTGAGAATATTAAATTTATAGGAAGTCACCTTTACTATTTCAGAAATGTATGGGAATTTGCCACCCCTGTTTTCAAATTTCAATGCCACAAATTTCAATGCCTATGATTAGCAGGGACTTCGAAATTTCACATTTACTAATAAATAAAGAAATAAAGAAATAAGAAGTTGTTTCT

Fln Alignment:

sp_v1.1_unigene3605___RNSPIDAANIELPRPPQRLGVFAHNKRLQNAHKLGSGLIPNPEDLVFDSHGRLYTGCGDGWIKRISFLDNLDVLVENWTYVGGRPLGLAFGSHGELLVCEPSQGLLNVTEGHVEILTDEADGLKFKLADGVDVSREGAVYFTDASYKYGFHNHLLDLLEYRPHGRLLKYEASTKTTSVLLKDLYFPNGVALSAKQDFLVFCETSLYRCQKYWLEGPEKGTVESFIDNLPGLPDNIHYDGNGTFWIGVPTSRTLTWTIATKFQSVRHVFALMATLAPGAVTDAIVDEPGVLAVNEMGDPIALYSNPNSKNQINTGLKRGDSLYSASLTLDYIGRVPLTQEI
B8LRM9______________RTSPIDPASIDLPHPPQRLGVFAHNNRLQNAHKLGSGLISNPEDLAVDSQGRLYTGSGDGWIKRISFVDNLDVLVENWTYVGGRPLGLAFGIHGELLVCEPSQGLLNVTEGHVEILAEEADGLKFKFADGVDASREGAVYFTDASYKYGFHDHLLDMLEYRPHGRLLKYDSSTKTTSVLLKDLYFPNGVALSAKQDFLVFCETTLYRCQKYWLEGPEKGTVESFIDNLPGLPDNIHYDGNGTFWIALATSRTLSWTIATKFPSVRHVLALIARLAPGAVIDAIVNEPSVLAVNEMGNPIALYADPNLSNQINSGLKMGDSLYYGSLTADYIGHVPLTEEI

SNPs (tot: 43)

Position	A %	C %	G %	T %	Probability
125	75	25			0.996473
395		80		20	0.999996
800	20	80			1.0
857	91		8		0.999807
1037	20		80		0.995493
1075		16		83	0.994512
1119		87		12	0.992554
1172	85	14			0.993533
1216		71	28		1.0
1260		14		85	0.993533
1326		23	76		1.0
1329			90	9	0.999872
1330		90	9		0.999872
1331	10	30		60	1.0
1333		90		10	0.999898
1334			10	90	0.999898
1336	90	10			0.999898
1340		10		90	0.999898
1342	10			90	0.999898
1344		60	40		1.0
1345	89			10	0.999919
1346		10		89	0.999919
1364		25		75	1.0
1370		60	40		1.0
1375		6	66	26	1.0
1389	61			38	1.0
1407		80	20		0.995493
1408	20			80	0.995493
1410			80	20	0.995493
1411	80		20		0.995493
1416	80	20			0.995493
1417		20	80		0.995493
1421			20	80	0.995493
1422	80			20	0.995493
1428		20	80		0.995493
1466			66	33	0.997452
1470	66			33	0.997452
1472	33		66		0.997452
1473		33	66		0.997452
1475			33	66	0.997452
1476	66	33			0.997452
1477	66	33			0.997452
1481		66	33		0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain