SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene3592

Length: 1805 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene3592

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Snf7 domain containing protein	-	-	3.99931e-42	29%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	94%
Blast2go	snf7 family protein	-	-	0.0	90%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Snf7	IPR005024	-	0.0	90%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LND7

Fln msg:

Fln protein: MRRVFGAKKDQEPPPSVQDAAEKINKRGDTVDEKVKKLDIELARYKEQIKKTRPGPAQEAIKARAMRILKQKRMYEGQREMIYNQTFNLDQVSFATEGIKDAQNTMAALKSANKELKGSLKTMKIEDIDNMQDDMMNLMDISTEIQDSLGRSYSVPDDIDEDELMGELDALEADMGSETQTDGVPAYLQPDRESDLDSELNLPSAPFGHTTVPQANPQTTDEFGLPAVPRASLRS*

Protein Length: 237

Fln nts: ATGGGGACTAATAAGATGGATCTTCATCGAAATATCTTCATCGCTTTGTGAAGCGATGGCCTCTCCTACGGATTGTGGGGTTACAATTGTTATTCTGGGAGTTAGAGTTTCGATGCTAATTCGCATACTTTGTTTGCATTCTACTCCAAAACATTCTGAAATTCACCCCTTCCCGTCAGGGCTGGAATGTTATAGGGCTTACTTTCCCTCACTCAAATGAGGCGCGAAGCATTCGACTCCTTGGCTGGCGCTACAGGCCTTTTCTTCACTTGATCAACGAATTTATATGAGACCGGTTCTTCGGGTGGCTGTTAATGGCTGTGCATAGACCTTCTGGTTAATGTTTCGTAAATATATTCCGCAAGCCCTAGCTGCTTTAGCCTACAAGGGCTAGTTTTCCTGTTATTGATTTCTGGGCGAGAGGTGGCGCAGTCGAGGAGGTATTCCCTGGCAGGTACGATTAGGTCATAAAACAGTAAAAAACAGAAGAGATTGGAAGGCCCTGTTAAGGATTCTGAACCGATTTTTAGATTGTGGGAATTCAGTTTTGTTCATCATATCAGGAAAG_-_ATGAGGAGAGTTTTTGGAGCCAAGAAGGACCAGGAGCCTCCTCCATCCGTTCAAGATGCTGCTGAAAAGATCAACAAAAGAGGTGACACGGTTGATGAAAAGGTTAAGAAACTCGATATTGAGCTTGCTAGATATAAAGAACAAATAAAGAAGACTAGGCCAGGCCCTGCTCAAGAGGCTATCAAAGCTCGGGCTATGAGGATACTCAAGCAAAAGAGGATGTATGAGGGACAGAGGGAAATGATTTACAATCAAACATTCAATCTTGATCAGGTTTCCTTTGCCACAGAGGGCATCAAGGATGCTCAGAATACGATGGCAGCCCTGAAATCTGCCAACAAGGAACTGAAAGGATCACTTAAGACAATGAAGATTGAAGACATTGATAATATGCAGGATGACATGATGAACTTAATGGACATAAGTACTGAAATCCAAGACTCACTTGGGAGAAGCTATAGTGTGCCTGATGACATTGACGAGGATGAACTAATGGGTGAGCTAGATGCACTGGAAGCTGACATGGGTTCAGAGACCCAAACTGATGGAGTGCCTGCTTATTTACAACCCGATAGAGAGTCTGATCTAGATTCCGAATTGAACCTGCCTTCAGCACCTTTTGGTCATACCACAGTTCCACAAGCCAATCCACAGACTACCGATGAGTTTGGGCTGCCGGCTGTTCCAAGGGCCTCACTTCGTTCATAA___GCAAGCACATTTTCCAAAACGACCTGTGTATGATATATATCTGGTCTGGTTATCATATGTATTGTGGCTGCACAGTACTGACGATGTCATTTTGTTGCTTCTGTCATCTGTTTCAATTCAGGGCATCAGTGTTTGTTGAAAGTCTTAGATAAATATATTCAGAGAAAATGTCGAGTGCTTTTATCTTTTTTTGTTTGTTACTTGTATGATATAAGTTTCAAAGTCCCAGATCATATATATGAAGTGTTGTGCTGCTGTTGTAGAATTGGATGTGATTTTGATGCCAATTACAAAGCCTAATATATCTATGGATAATATTTTATGAGTGTAATGTCTTTATTACACTCAGAAAATTGATGTGCATTTTACAGTCTAGGATAAGGGAGACGTGTAATGTCAATGTTAGGTTCTAACACCAATCATGTTGAAAGGCATTGTTTTTAATTGCATAAATAGAGGAGAGTTCTGAAAATGGTATGCAAATATTGAGATAGTCCAACTTGTATCTGTGCAGTATGTTGAATATTAA

Fln Alignment:

sp_v1.1_unigene3592___MRRVFGAKKDQEPPPSVQDAAEKINKRGDTVDEKVKKLDIELARYKEQIKKTRPGPAQEAIKARAMRILKQKRMYEGQREMIYNQTFNLDQVSFATEGIKDAQNTMAALKSANKELKGSLKTMKIEXXXXXXXXXXXXXXXSTEIQDSLGRSYSVPDDIDEDELMGELDALEADMGSETQTDGVPAYLQPDRESDLDSELNLPSAPFGHTTVPQANPQTTDEFGLPAVPRASLRS
B8LND7______________MRRVFGVKKDKEPPPSVQDAAERINKRGDTVDEKVKKLDIELARYKEQIKKTRPGPAQEAIKARAMRILKQKRMYEGQREMIYNQTFNLDQVSFATEGIKDAQNTMAALKSANKELKGSLKTMKIEDIDNMQDEMMDLMDISTEIQDSLGRSYSVPDDIDEDELMGELDALEADMGSETQTDGVPAYLQPDKESDLDSELNLPSAPSGRATVPQANQQTTDEFGLPTVPRASLRT

SNPs (tot: 7)

Position	A %	C %	G %	T %	Probability
179	20		80		0.995493
192	40		60		1.0
298		50		50	1.0
550		40	60		1.0
1319	11		88		0.999952
1320		11	88		0.999952
1733	71		28		1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain