SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene3579

Length: 1327 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene3579

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	hus1-like protein; K10903 HUS1 checkpoint protein	-	-	51%
FL-Next	tr=Predicted protein; Physcomitrella patens subsp. patens (Moss).	-	-	67%
Blast2go	hus1-like protein	-	-	78%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Hus1-like protein	IPR007150	-	0.0	78%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: tr_plants

Fln subject: A9S9W0

Fln msg:

Fln protein: MKFKAFLTVNGVNLLERRFVPAFDKIGRVCHLYLTRDHVILLHNVLNADGVQAIAQFKKEVLFDEYRISSQNDDRIAFTVDLALLLRALKSSVSMDGEKLQVKLVKKRPIAAERPMPYLTFESKGYKSAIIQDVPVSNPLSRVEVHELQSALDMAQDLPQTLVQVPDLLQLQSLVDRLKNVGEVLDVAITQHGDFYLQVCTTFVTVGSEYSRLRVVGVRANSPLDESISSSARLERALQRGEASSVQVSIKHFAKSIQCYMTRPDAAFYGIASEGACLTVNFSVSLFQELARQTIL*

Protein Length: 298

Fln nts: CGTCGTGACCTTGGCTGTCATGGGGGTGTATCTACATACTGCACGTTGGAAGAGCGGAGGCCATC_-_ATGAAATTCAAAGCTTTTCTCACCGTCAATGGAGTTAATTTGCTGGAACGAAGATTTGTCCCTGCATTTGATAAAATTGGGAGAGTGTGCCATTTGTACCTGACCAGAGATCATGTCATACTTTTGCATAATGTTCTCAACGCAGACGGTGTACAAGCCATTGCTCAATTCAAAAAGGAAGTACTTTTTGATGAGTACAGGATTTCTAGTCAGAATGATGATCGCATTGCATTTACTGTGGACTTGGCTCTTCTACTACGAGCTCTCAAAAGCAGTGTCAGTATGGATGGTGAAAAACTGCAAGTTAAACTTGTGAAGAAACGTCCAATTGCAGCAGAGAGGCCAATGCCTTATCTAACTTTTGAGAGCAAGGGTTATAAGTCAGCAATCATTCAAGACGTTCCAGTGTCAAACCCATTGTCAAGGGTGGAAGTTCATGAATTGCAGTCTGCTCTTGATATGGCACAAGACTTGCCACAAACTTTGGTTCAAGTACCAGATTTACTTCAGTTGCAGTCTCTTGTTGATCGCCTCAAGAATGTTGGTGAGGTGCTTGATGTTGCAATTACTCAACATGGAGACTTCTATTTGCAAGTGTGTACAACCTTTGTCACAGTTGGCTCAGAGTATAGTAGGCTAAGGGTTGTTGGTGTTCGAGCAAATTCACCTTTGGATGAATCTATCAGCTCTTCAGCTCGGCTTGAAAGAGCACTTCAAAGAGGAGAAGCTTCATCTGTGCAAGTCAGCATTAAGCACTTTGCAAAGAGTATTCAGTGTTACATGACAAGACCTGATGCTGCTTTTTATGGCATTGCTTCAGAAGGAGCCTGCTTGACTGTTAATTTTTCAGTTTCTTTATTCCAGGAACTCGCCAGACAGACAATTCTATAA___GCTTGCATTGCAGATTGCCTGTACTTGATCCAGGGTTAACATAAAAATTGAATAGTTTCCTTGTATTAGAAGGTAAATAAACACGCATCAAATGGCATACCTTTTGATTGGAAGTAAATTTCAATTTTCTGCTTAGAAGTATGAAGTTCTTGCTATGGTACATAGCAAGACATGATTAGCTTTTACAAAAATGTATGTGTTGTATATGTTTTGTGTGCTGAACTTTTCATGGATGTTTTCATTTGGAAAAATGATATGTAATATGATAAAATTTAGTGTTAGTTTTCTTCTTTCTTTGATTATATCACTTAATGCTGACGACTGTCAAGATTCTTTTGAGTTGACCCTACTGTACTTCCTATCATAAGAGT

Fln Alignment:

sp_v1.1_unigene3579___MKFKAFLTVNGVNLLERRFVPAFDKIGRVCHLYLTRDHVILLHNVLNADGVQAIAQFKKEVLFDEYRISSQNDDRIAFTVDLALLLRALKSSVSMDGEKLQVKLVKKRPIAAERPMPYLTFESKGYKSAIIQDVPVSNPLSRVEVHELQSALDMAQDLPQTLVQVPDLLQLQSLVDRLKNVGEVLDVAITQHGDFYLQVCTTFVTVGSEYSRLRVVGVRANSPLDESISSSA-RLERALQRGEASSVQVSIKHFAKSIQCYMTRPDAAFYGIASEGACLTVNF
A9S9W0______________MKFKAFLTDHGVTLLERRFLPAFEKIGKTCHIYLTPVHFILLHNVLNSDGVQAIAQFSKDAVFDDYRISSQNQNRIAFTVDLALLLRALKSSVSIYGDRLQLKLVRKRPSLSERPMPYLTFESKGLKSAIIQDVPISQPLNRIDVEALQSSLDMAQELPRTLVQVPGLQNLQGLIDRLGKLGDVLEVAVTQYGDLHLQVSQTMVSIGSEYRKLRVLGVRSDPTSTGSASSSASRLQQAIQKGEASRVLVNMKHFAKSLQCHLTRPDAAFCGVGELDSCLFMMF

SNPs (tot: 32)

Position	A %	C %	G %	T %	Probability
32		75	25		0.996473
33			25	75	0.996473
34	75		25		0.996473
35		75	25		0.996473
172	80			20	0.995493
317		16		83	0.994512
556	14			85	0.993533
557		85		14	0.993533
558	85		14		0.993533
559	85		14		0.993533
710		11	88		0.923564
711	11			88	0.923564
715			11	88	0.923564
909		9		72	0.999994
920			11	88	0.923564
922		11		88	0.923564
924		11		88	0.923564
935		88		11	0.923564
988	88	11			0.923564
990			85	14	0.993533
991		14	85		0.993533
992			14	85	0.993533
994	85		14		0.993533
997	85	14			0.993533
999	83			16	0.994512
1000	83		16		0.994512
1001	83		16		0.994512
1002	83	16			0.994512
1003	83			16	0.994512
1004			16	83	0.994512
1006		16	83		0.994512
1008	66	16	16		0.988813

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain