SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene3553

Length: 1084 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene3553

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Unassigned protein	-	-	65%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	72%
Blast2go	unknown [Picea sitchensis]	-	-	79%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: C0PT67

Fln msg:

Fln protein: MNTGGTDKKRTREEQEMSPPEDSCRQKQTRLVEFETGMGFDKPENAGAGNENLPEFCSLSKEYSMLLRDPWNWEDSAGFGVRSIAAIRKQSYILDYLHDSAVVKSTEEEVAEQQVEEEDCLRGSLFEATDDLLWRPQSPLPSTEFLFSLDSMGSHDCTTLLQDESIAQGASSCFRIWEQDDDHKDDKSHAGSVSFENESRVSDWILGAPSNQSQFSESVEFESSIPSL*

Protein Length: 230

Fln nts: CGTCGTGACCTTGGCTGTCACTCAGGTCTTAGACCCAATTTCACACAGATTGATCAGATTGATCAGCTTGTAATTTGAGGATCCGAGCTGGAACCGCTCTATAAAGCCTGTCGTGGTCTTTGCTTTCTGGCAGCCCGTGCATCCATTTGTTCAATCTAACATTAAAGATGCAGTCGGTCATGGGGTTTGGGGTTTCCCGGTGATTTGTTAGGTAGTGACTTGCTTATTTTCCTGATTCAAAATAATAGCCCGAAGAGAACCAGGAAC_-_ATGAATACAGGAGGCACCGACAAGAAGCGGACCAGAGAAGAGCAGGAGATGAGTCCGCCTGAGGATTCCTGCAGACAGAAACAGACACGTTTAGTGGAATTTGAAACAGGGATGGGCTTTGACAAGCCTGAAAACGCCGGTGCAGGTAATGAGAATCTGCCAGAGTTTTGCTCCCTTTCGAAGGAGTATTCGATGTTATTGAGGGATCCATGGAATTGGGAGGATAGCGCGGGTTTTGGAGTCCGAAGCATAGCAGCTATCAGGAAGCAATCTTATATATTGGATTATCTTCACGATTCTGCAGTAGTTAAAAGTACTGAAGAAGAAGTTGCAGAGCAGCAGGTGGAGGAGGAGGATTGTTTAAGAGGCTCCCTTTTTGAAGCCACCGATGATCTGCTCTGGAGGCCTCAGAGTCCTTTGCCGAGTACAGAGTTTCTGTTTTCTCTGGATTCCATGGGCAGCCATGATTGTACTACCCTGCTGCAGGATGAGAGCATTGCTCAGGGTGCTTCTTCTTGCTTCAGAATTTGGGAACAAGATGATGATCACAAAGATGACAAAAGTCATGCAGGTAGCGTTAGCTTTGAGAATGAGAGTAGGGTCTCGGACTGGATTTTGGGGGCTCCCTCGAATCAATCTCAGTTTTCTGAATCTGTTGAATTTGAAAGCTCTATACCTTCACTGTAA___TTGGGTATTTTCATTTCATTGCAGCTATGTTTTCTGGTAGCTGGTATTTAATCAAAACATTAGCCTTTGTTTTTATGAAATGTTGGCATTGTGCTACTCAGGGAATGAAAAAAAGTTCAATGTGTGTTTC

Fln Alignment:

sp_v1.1_unigene3553___MNTGGTDKKRTREEQEMSPPEDSCRQKQTRLVEFETGMGFDKPENAGAGNENLPEFCSLSKEYSMLLRDPWNWEDSAGFGVRSIAAIRKQSYILDYLHDSAVVKS--TXXXXXXXXXXXXDCLRGSLFEATDDLLWRPQSPLPSTEFLFSLDSMGSHDCTTLLQDESIAQGASSCFRIWEQDDDHKDDKSHAGSVSFENESRVSDWILGAPXXXXXXXXXXXXXXXIPSL
C0PT67______________MNMGGADKKRIREDQESSPPEDPCRQKQARLMEFEAGMTFDKAENAGAGNENLPEFCLLSNEYSMLLKDPWSWEESAGFGIRNMAAIRKQSYILDYLQDSTVDNSREKEVAEQPKLQVEEDCLTGSFFEATDDQLWRPQSPLPNKEPLFSLDYMGSHDYTTMLQDGSVAESAASCFRIWEQDDDHKDEKNHADGISFLYGSGVSDWIWGPPLNQSQFSESVEIESSMPSL

SNPs (tot: 25)

Position	A %	C %	G %	T %	Probability
319	10		90		0.90298
325		10	90		0.90298
326		20		80	0.999996
346	11		88		0.923564
353	22		77		0.999999
354		22		77	0.999999
358		77		22	0.999999
373	66		33		0.997452
378		33	66		0.997452
705			46	53	1.0
753		36		64	1.0
775	26	73			1.0
835	83		16		0.999991
877		57		42	1.0
878		39	60		1.0
973	50			50	1.0
977	50	50			1.0
1013	40	60			1.0
1027	16	16		66	0.988813
1028	20		80		0.995493
1029		20		80	0.995493
1033	14			85	0.993533
1038	85		14		0.993533
1043			16	83	0.994512
1056		80	20		0.995493

SSRs (tot: 1)

Start position	End position	Sequence	Length
612	623	GGA GGA GGA GGA	12

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain