SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene3550

Length: 1203 nt

Origin of reads: Biogeco_1 Biogeco_2 Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene3550

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	transferase family protein [Arabidopsis thaliana] gb\|AAD45999.1\|AC005916_11 Similar to gb\|Z84571 anthranilate N-hydroxycinnamoyl/benzoyltransferase from Dianthus caryophyllus [Arabidopsis thaliana] gb\|AAF24940.1\|AC012375_3 T22C5.6 [Arabidopsis thaliana] g	-	-	45%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	88%
Blast2go	protein	-	-	65%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Transferase	IPR003480	-	0.0	65%
Blast2go	Chloramphenicol acetyltransferase-like domain	IPR023213	-	0.0	65%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NW97

Fln msg: Distance to subject end: 109 aas, your sequence is longer than subject: 342 - 265

Fln protein: MLLSDLPVTAQAPVLVPPSQPTPCKVLSLSNLDDQLFLRFTIKYILVYRARNGDEDSVEVMRSALAKVLVFYYPLAGRLRRSGDLQNNKNNSNGRLEVVCNGEGAVFVEASADLTIDEFYRVQKPCKTWKKLFHKVDADSFVGIPPLVVQVTRLRCGGFVLCVGFSHCLCDGLGSSQFLHAWAEMARGETVVSVRPVWGRHLLRPRCPPRVEYSHPEFKQVQDFCNLKERLKPDAIVSSSVCFNSAQLLELKKIASRDSACKCTYTSFEVLAAHVWRCWIRAMDLPSVQSIKLLFSVNVRKRLQPQLPDGFFGNGFVLACAETTVKELSESSLSYAVKLVQK

Protein Length: 343

Fln nts: CGTCGTGACCTTGGCTGTCACTCAAGCTTCGCCCTTTGCATTTTTCTGTCTTCAGCAGCTGCCAGGTTTTAGGTATTCTCATATATCTATCGCTAGTCTCAAATTTTGTCCTCCTCCTTACCTCGTTCGTTCGTTACCACTCCGCGCTCTAAAAGTACAAACGGCGGTTTTTATCAA_-_ATGCTTCTCTCGGATCTGCCAGTGACCGCGCAGGCGCCGGTTCTGGTGCCCCCATCGCAGCCCACCCCTTGTAAAGTCCTCTCTCTCTCCAATCTGGATGATCAGCTCTTCCTACGATTTACGATCAAATACATTCTCGTGTACCGCGCCAGAAATGGAGATGAGGATTCCGTGGAAGTTATGAGGTCCGCACTCGCCAAAGTCCTGGTTTTCTATTATCCTTTGGCAGGAAGGTTAAGAAGATCCGGTGACTTGCAAAACAACAAGAACAATAGCAATGGCAGGTTAGAGGTCGTCTGCAATGGAGAAGGGGCCGTCTTTGTTGAAGCTTCTGCGGATTTGACCATCGACGAATTCTACCGCGTCCAGAAACCTTGCAAGACTTGGAAGAAGCTGTTCCATAAGGTCGATGCTGATAGCTTTGTGGGCATTCCACCGCTAGTGGTTCAGGTTACGCGGCTGAGATGTGGAGGGTTTGTTTTGTGTGTGGGATTTAGCCACTGCTTGTGTGATGGGCTGGGAAGTTCGCAGTTTCTGCATGCATGGGCGGAGATGGCCAGAGGGGAAACCGTGGTTTCAGTTCGCCCAGTGTGGGGACGGCATTTGCTTCGCCCCAGGTGTCCACCACGGGTTGAATACTCGCATCCCGAGTTCAAACAGGTTCAGGATTTCTGTAATTTGAAGGAGCGATTGAAACCCGACGCAATTGTCAGTAGTTCCGTATGCTTCAACTCTGCGCAACTGCTGGAGCTGAAGAAAATCGCTTCTAGGGATTCGGCTTGTAAATGCACTTACACGTCCTTTGAAGTGCTGGCCGCTCATGTGTGGAGATGTTGGATCAGAGCCATGGACCTGCCGAGTGTCCAGTCCATCAAACTTCTGTTCAGCGTGAATGTTCGCAAGAGGCTTCAGCCTCAACTTCCTGACGGTTTTTTCGGAAACGGGTTTGTGCTGGCATGTGCAGAAACCACGGTGAAAGAGCTGAGCGAGAGCTCCCTGTCGTACGCGGTGAAGTTGGTGCAGAAG

Fln Alignment:

sp_v1.1_unigene3550___MARGETVVSVRPVWGRHLLRPRCPPRVEYSHPEFKQVQDFCNLKERLKPDAIVSSSVCFNSAQLLELKKIASRDSACKCTYTSFEVLAAHVWRCWIRAMDLPSVQSIKLLFSVNVRKRLQPQLPDGFFGNGFVLACAETTVKELSESSLSYAVKLVQK
A9NW97______________MARGGTGVSVHPVWRRYLLRPRYPLRVEYSHPEFKQVQDFCNFKERLRPDAIVSSSVCFTSAQLLELKKIVSRDSACKCT--SFEVLSAHVWRCWIRAMDLPGVQTIKLLFSVNVRKRLQPQLPQGFFGNGFVLACAETTVKDLSESSLSYAVKLVQK

SSRs (tot: 1)

Start position	End position	Sequence	Length
123	135	TCGT TCGT TCGT T	13

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain