SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene3530

Length: 695 nt

Origin of reads: Biogeco_2 Uagpf Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v1.1_unigene3530 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	ZIF1; ZIF1 (ZINC INDUCED FACILITATOR 1); carbohydrate transmembrane transporter/ sugar:hydrogen symporter/ tetracycline:hydrogen antiporter	-	-	6.0e-20	52%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	81%
Blast2go	protein	-	-	8.44983e-43	78%

Source	GOs	Term	Type	e value	Identity
Blast2go	response to nematode	GO:0009624	Biological Process	8.44983e-43	78%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Major facilitator superfamily domain, general substrate transporter	IPR016196	-	8.44983e-43	78%

Full-Lengther Next Prediction

SNPs (tot: 18)

Position	A %	C %	G %	T %	Probability
284	25		75		0.996473
536		66	16	16	0.988813
537		66		16	0.988813
538			18	81	0.999994
539	18	81			0.999994
540		81	18		0.999994
542		81	18		0.999994
543	18	81			0.999994
548		20		80	0.999996
549	20		80		0.999996
553		80		20	0.999996
556	77	22			0.999999
559		22		77	0.999999
561	16			83	0.994512
596		16		83	0.994512
653		25	75		0.996473
654		25		75	0.996473
655	25		75		0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain