SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene3513

Length: 1006 nt

Origin of reads: Biogeco_1 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene3513

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	cyclase/dehydrase	-	-	61%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	84%
Blast2go	protein	-	-	79%

Source	GOs	Term	Type	e value	Identity
Blast2go	chloroplast	GO:0009507	Cellular Component	0.0	79%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Streptomyces cyclase/dehydrase	IPR005031	-	0.0	79%
Blast2go	START-like domain	IPR023393	-	0.0	79%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NTJ7

Fln msg:

Fln protein: MYATEASLQHTVMGASGLLALNIALPTAKTKFCRSSITSKYGVTYQNWTTGSSRVLSPWQASPRQKQRLSKWGLVSSNGRRTTTMAWQDSTARVEVDVPLSVAWELWSDREGVNRWMPWIASIKILKDRPELSEWTLKYNAFGRDLEFSWLARNLQPIRNQKIHWHSLDGLPNKGAVRFYPRGSTSCGVELTISYEVPQILAGVASGLSPVVESVLRNDLERFALFAKDYQLKSSAK*

Protein Length: 239

Fln nts: CGTCGTGACCTTGGCTGTCACTCAATATCTAATCATTTGTCGAAAACGGATGAGAATCCGTGTAGAAAC_-_ATGTATGCGACGGAGGCGTCCTTGCAACATACAGTCATGGGGGCATCCGGTTTACTTGCTCTAAATATAGCGCTACCAACTGCTAAAACCAAATTCTGTCGCTCCTCTATCACCTCTAAATATGGCGTCACTTACCAAAATTGGACCACAGGAAGCAGCAGAGTATTATCGCCATGGCAGGCTTCGCCCCGCCAGAAGCAGCGATTGAGCAAATGGGGGTTGGTTTCAAGCAATGGGAGGCGTACGACGACTATGGCGTGGCAGGATAGCACGGCTCGAGTGGAAGTTGATGTCCCTTTGTCTGTGGCCTGGGAATTATGGTCTGACAGGGAAGGTGTGAACCGTTGGATGCCCTGGATTGCTTCCATAAAGATCTTGAAGGATCGGCCAGAGCTGTCAGAATGGACTTTGAAATATAATGCATTTGGCAGGGATCTTGAATTTTCTTGGCTTGCTCGCAATCTGCAGCCAATCCGCAATCAGAAAATACACTGGCATTCTTTAGATGGCCTTCCAAATAAAGGGGCTGTGCGCTTTTATCCCAGAGGGTCAACCTCATGTGGTGTTGAACTTACTATATCTTATGAAGTTCCTCAAATCCTTGCAGGTGTTGCTTCAGGACTCTCTCCTGTGGTTGAAAGCGTTCTTCGAAATGATTTGGAGCGCTTTGCATTATTCGCAAAAGATTATCAATTGAAGTCTTCAGCTAAATAA___GTGCTTTAATGTTCAATAAGTAATATTGTTCAACATATTGATTTATGCTAATGATGCATGTATTTGAATGATTTTCTACTTGAAAATTGTTGTCTTCATTTTGTAATTGTATCATAAGCTATATAATATCAAATAATACTTAGGATTGAATATTTTCATATTAAAAATGTTAGACCAGAGGCTTAAGAAATCATAATTTGCTTGCATCATAATTTTGCAATAG

Fln Alignment:

sp_v1.1_unigene3513___MGASGLLALNIALPTAKTKFCRSSITSKYGVTYQNWTTGSSRVLSPWQASPRQKQRLSKWGLVSSNGRRTTTMAWQDSTARVEVDVPLSVAWELWSDREGVNRWMPWIASIKILKDRPELSEWTLKYNAFGRDLEFSWLARNLQPIRNQKIHWHSLDGLPNKGAVRFYPRGSTSCGVELTISYEVPQILAGVASGLSPVVESVLRNDLERFALFAKDYQLKSSAK
A9NTJ7______________MGASGVLVINIALPSAKTTFYRPSI-SKYDVSYQNWTRGSCRILSPGQASPCHKQRSSRWGLVSTNRRRPTTMAWQDITARVEVDAPLSVAWELWSDREGVNRWMPWIASIKILKDQPELSEWTLKYNAFGKDLEFSWLARNLQPIRYQKIHWRSLDGLPNRGAVRFYPRGSTSCGVELTISYEVPELLAGVASGLSPLVERILRNDLERFAVFAKDYQLKSSRK

SNPs (tot: 4)

Position	A %	C %	G %	T %	Probability
917		33		66	1.0
935	50		50		1.0
939	25			75	0.996473
941	66		33		0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain