SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene3504

Length: 1149 nt

Origin of reads: Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene3504

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Xyloglucan endotransglucosylase/hydrolase protein 22, putative n=2 Tax=Ricinus communis RepID=B9SJQ9_RICCO	-	-	62%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	56%
Blast2go	xyloglucan endotransglucosylase hydrolase protein 22	-	-	74%

Source	InterPros	Term	Type	Identity
Blast2go	Glycoside hydrolase, family 16	IPR000757	-	74%
Blast2go	Glycoside hydrolase, family 16, active site	IPR008263	-	74%
Blast2go	Beta-glucanase	IPR008264	-	74%
Blast2go	Concanavalin A-like lectin/glucanase	IPR008985	-	74%
Blast2go	Xyloglucan endo-transglycosylase, C-terminal	IPR010713	-	74%
Blast2go	Concanavalin A-like lectin/glucanase, subgroup	IPR013320	-	74%
Blast2go	Xyloglucan endotransglucosylase/hydrolase	IPR016455	-	74%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NLP1

Fln msg:

Fln protein: MYSNNSLKIYFPLMARYFTAAVLLFRAIVVVANFYNDFDITWSNDHAKILDNGREIQLSLDKESGSAFQSKKEYLFGKYHMHIKLIPNNSAGTVTSFYLSSQGSNHDEIDLEFLGNISGEPYILHTNIYTDGFGNREQQFYLWFDPRATFHTYSVVWSPQLLILLVDNTPIRVFPNNEHLGVPYPNKQPMGVYSSVWNADNWATRGGLVKTDWSKAPFVASFRNFNVLQGSSNATAQNISCCASTSTSNYTQTSGNQVTQCLNPTQQQRLRWVQKHCMIYNYCNDAKRFPQGFPPECRST*

Protein Length: 302

Fln nts: GCTATTACTATTTTTCTCTGCACAATCTACTCTTTTCTCGACCCAAAAAAAATGACCCCTGAAGCAGTTTTCAGATATACATAGTTTTGTCCGTAATTAGACCACGAAATCTATACATCC_-_ATGTATTCAAATAATTCACTCAAGATTTATTTTCCCCTGATGGCCAGATATTTCACAGCTGCTGTGCTTTTGTTTAGAGCAATAGTCGTTGTAGCGAATTTCTACAATGACTTTGATATCACATGGTCTAACGATCACGCTAAGATACTTGACAATGGTCGCGAGATACAGCTCTCTCTAGACAAGGAATCAGGTTCTGCATTTCAATCCAAGAAAGAATATCTATTTGGAAAATACCATATGCATATCAAGTTGATACCCAACAACTCTGCTGGCACTGTCACTAGCTTCTATCTTTCTTCTCAGGGTTCTAATCATGACGAAATTGACTTGGAATTCTTGGGAAATATTTCTGGCGAACCCTATATTTTGCATACCAATATCTACACTGATGGATTTGGCAACAGAGAGCAACAATTCTACTTGTGGTTCGATCCTAGAGCAACTTTTCACACATATTCTGTTGTTTGGAGCCCACAACTATTAATATTATTAGTTGACAATACTCCAATTAGAGTATTTCCCAACAACGAGCACTTGGGTGTACCTTATCCTAACAAACAACCAATGGGAGTTTACTCCAGCGTTTGGAATGCAGACAATTGGGCTACCAGAGGTGGTTTGGTGAAGACTGACTGGAGTAAAGCTCCCTTCGTAGCATCGTTCCGCAACTTCAATGTGCTGCAGGGTTCAAGTAACGCGACTGCTCAAAATATTTCCTGTTGCGCCTCTACTTCAACCTCTAATTATACTCAGACAAGTGGGAACCAAGTCACCCAGTGTTTAAATCCGACCCAACAACAAAGGCTTCGTTGGGTTCAAAAACATTGTATGATTTACAATTACTGTAATGATGCTAAGAGATTTCCACAGGGATTTCCTCCCGAATGCAGGAGCACATAA___GATCTGATCGTTAGGTTCGTCATAACATAAAGATTTAGAGAAGCCATGAATGCTCATTAGATAACATAAGTTAATGATTCAAAGAAGTCATTAAGCCTTCGTGATGTATGTTTTTCAGTTTGTACT

Fln Alignment:

sp_v1.1_unigene3504___IYFPLMARYFTAAVLLFRAIVVVANFYNDFDITWSNDHAKILDNGREIQLSLDKESGSAFQSKKEYLFGKYHMHIKLIPNNSAGTVTSFYLSSQGSNHDEIDLEFLGNISGEPYILHTNIYTDGFGNREQQFYLWFDPRATFHTYSVVWSPQLLILLVDNTPIRVFPNNE-HLG-----VPYPNKQPMGVYSSVWNADNWATRGGLVKTDWSKAPFVASFRNFNVLQGSSNATAQNISCCASTSTSNYTQTSGNQVTQCLNPTQQQRLRWVQKHCMIYNYCNDAKRFPQGFPPECR
A9NLP1______________MYTPFLLLFL---LLTFSAALVSANFYSDFDITWGDDRAKILDNGQQLQLTLDRTSGCGIQSKQEYLFAKIDMQIKLIPGNSAGTVTTYYLSSQGPKHDEIDFEFLGNLSGDPYVMHTNVFAQGLGNREQQFYLWFDPTLDFHTYSVLWTPNQIIFSVDGTPVRVFKNRETELGKVDTNYHYPKSQAMRIYSTLWNADDWATRGGLVKTDWTKSPFAASFRNFNAVTSSSNSTAE----------------------EALDSNQERSLQWVQKNYMIYDYCADTKRFPQGLPPECK

SNPs (tot: 8)

Position	A %	C %	G %	T %	Probability
94			42	57	1.0
357	90			10	0.90298
358		90		10	0.90298
359		90	10		0.90298
361	10			90	0.90298
386	60		40		1.0
580		14		85	0.993533
1008	50	50			1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain