SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene3502

Length: 1772 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene3502

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Yth domain-containing protein, putative n=1 Tax=Ricinus communis RepID=B9RZX3_RICCO	-	-	44%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	51%
Blast2go	yth domain-containing	-	-	72%

Source	InterPros	Term	Type	e value	Identity
Blast2go	YTH domain	IPR007275	-	0.0	72%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LNC4

Fln msg: your sequence is longer than subject: 305 - 194

Fln protein: MIGPVDFKSTMDFWQLDKWSGCFPVKWHIIKDVSNSNLRHIILENNENKPVTNSRDTQEIKYIQGMEMLKIFKNYSTKTSILDDFEYYEDREKAMRDKKLRLHAKQLQPLAHVGAQIDSKKSEEHLHQSDGKVENSSDLKVTDYGTPVSHVEEIDIKHTVSVFPVERGEERCQIKAVGAKKDDYKGVNANIPISPIEKKEERSQIKVVDVKDNDKGVNSNSPTVLTVGTVAIDTRGINYDSPGILTVGTIPIDTRINCDSPNVLTIGTMLIDTNGVKSDIPSRLTVGTIALDPKDILTAGSIPS*

Protein Length: 306

Fln nts: AGCTGAG_-_ATGATTGGTCCTGTGGATTTCAAAAGTACCATGGATTTCTGGCAACTGGACAAATGGAGTGGTTGCTTCCCAGTGAAATGGCATATCATAAAGGATGTGTCAAATTCTAATCTCCGTCACATCATTTTGGAAAACAATGAGAATAAGCCTGTAACAAACAGTCGAGATACACAAGAGATTAAATATATCCAGGGTATGGAGATGCTAAAAATTTTCAAAAACTACTCAACAAAAACATCGATACTTGATGATTTTGAGTATTATGAAGACCGTGAAAAAGCTATGCGAGACAAAAAATTGAGGCTTCATGCTAAACAGCTGCAGCCATTAGCACATGTAGGAGCTCAGATTGATTCGAAGAAATCTGAGGAACATTTACATCAATCAGATGGAAAAGTGGAAAATTCTAGTGATTTGAAGGTGACTGATTATGGTACTCCAGTGTCTCATGTAGAAGAAATTGACATAAAACATACTGTTTCAGTGTTTCCTGTTGAAAGGGGCGAAGAGAGATGTCAGATCAAGGCGGTTGGTGCAAAAAAAGATGATTACAAAGGAGTTAATGCAAACATTCCAATTTCTCCTATTGAAAAGAAAGAAGAGAGATCCCAGATCAAGGTGGTTGATGTGAAGGACAATGACAAAGGAGTTAATTCTAACAGCCCAACTGTTTTGACAGTGGGCACTGTGGCTATTGATACAAGAGGAATCAATTATGACAGCCCAGGAATTTTAACAGTGGGTACCATCCCAATAGATACAAGAATTAATTGTGATTCTCCAAATGTTTTGACTATAGGTACCATGCTTATTGATACAAATGGAGTTAAATCTGACATACCAAGCCGCTTAACAGTGGGCACTATTGCTCTTGATCCTAAAGATATTCTTACTGCAGGTTCCATCCCTAGTTAG___TGATGATAGGAAGATATTATCATTCTGACCTCCTAACATGGGCTCTGGAGGAATTCCAAATCAGTGCTGTTGGCCATGTGCTAGGGCTCAGATTAACATATGTGGGTGAATTGTCTGTTTGCATTGAGCTGAGTGTAACATAGCCATCTGCTTAGGTTTCAGATACTGGTAAAAGGAAAGCTCAACAAGAGTTGTTTTAGCAATTTATGTAACTGTAGTTGTAACTCCATTTCTTTTATGTGTTCTAGATTTGGTATTCGTTTTTTCTATGTCAGGATACATTGTCAATTCATTTTGTCAAATTATTGGGAGCAACCATCCCCTTTGTTCTGCCAGTTAATTAATCTTTTTCCAGAGGGTTGCCCATTGTTGGCTGATGTTTTTGACATATGCTGGTGCTTCCATGGTAGCCTGACTCTATGGCCGGGGAAGCAATATTGATTCTTGATTGCCTGCTTTGACCATGATAATTGTAACAAATTTCAGAAATAGTAGTCTCACCAAGGGGAGTAAATTTAATTCTGGATTATTGTGCCAGATTATGTTGGAAACACATCCTTGTAAAAAGGCTTACTGGCAAATTCTAGAGGCTATACAATGTTGCCACCAGGTGCTCTCTACATATTTAGTTTCCCATGCAGAGAATTATTTCATAAAAGGCTTATTTGAGCTTTTTGTTTTTGTTTCATGAGTTATGTAATTATTTGGAACAGTGGTTTCTGGAGCAACCGTGTTACGGATATCTATGTAATTATTGTTAAGGAAGATATGTACAACTGATTCCACCATATTCGGGGTTGTGGAATTATAAGGAATGTGAAAGGACCAAAGGTTGGACTTTATATCTCCC

Fln Alignment:

sp_v1.1_unigene3502___MIGPVDFKSTMDFWQLDKWSGCFPVKWHIIKDVSNSNLRHIILENNENKPVTNSRDTQEIKYIQGMEMLKIFKNYSTKTSILDDFEYYEDREKAMRDKKLRLH-AKQLQPLA--------HVGAQIDSKKSEEHLHQSDGKVENSSDLKVTDYGTPVSHVEEIDIKHTVSVFPVERGEERCQIKAVGAKKDDYK
B8LNC4______________MVSSVDFHTSMNFWQQDKWNGFFPVKWHIIKDVPNSQFRHIILENNDHKPVTNSRDTQEIKFTQGIEMLNIFKNYMAKTSILDDFVFYENRQKTMQDKKRQSNQPEQLQPPALADAVQKMGLGEQVD--KTEE-----DARVSNHSDLRAANGN---QHSNSSITKNTALEPSSVRKEQTAPSKLVDLKKSELK

SNPs (tot: 23)

Position	A %	C %	G %	T %	Probability
242	87	12			0.992554
364	33		66		1.0
435	75		25		1.0
537		83		16	0.994512
546	16	83			0.994512
547	83	16			0.994512
577		90		10	0.90298
689	90			10	0.90298
690			90	10	0.90298
694			90	10	0.90298
984	86		13		0.999973
1167	10			90	0.999898
1297		10		90	0.999898
1299			90	10	0.999898
1304		10		90	0.999898
1305		10	90		0.999898
1308			10	90	0.999898
1309			10	90	0.999898
1312	90			10	0.999898
1316	90	10			0.999898
1317	10			90	0.999898
1457			77	22	0.999999
1709	16	83			0.994512

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain