SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene3477

Length: 1498 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v1.1_unigene3477 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	[R] COG0666 FOG: Ankyrin repeat	-	-	7.0e-15	32%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	31%
Blast2go	aberrant large forked	-	-	0.0	69%

Source	GOs	Term	Type	e value	Identity
Blast2go	protein binding	GO:0005515	Molecular Function	0.0	69%
Blast2go	chloroplast	GO:0009507	Cellular Component	0.0	69%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Ankyrin repeat	IPR002110	-	0.0	69%
Blast2go	Ankyrin repeat-containing domain	IPR020683	-	0.0	69%

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: coniferopsida.fasta

Fln subject: A9NN39

Fln msg: No stop codon before M and low homology subject, your sequence is longer than subject: 400 - 247

Fln protein: MMELEQSFQRKREIELFREGASKFNTIKLPPLNFSTPDSGNKQTSEDDKVLSTRLISSTPDSDDNQTQEDNKGFSTKLEFSSKDTDSELSGETESLNGENKVENESENFSVSYEQKEAVTDDKEETAIGSVQDEQEVDNSVPVQDALGSSSSKRVSPRNPRLELAGAGFEDIIRSFSGEYKAKDNEITEEEPRKERRQLYTPEEKILLNQRTPDFQRATSAKWIPLHVFATAGQSYLLDFLLTHNVDINSVDKDGLTALNKAVLCKKEGIVSYLLKAGGNALIRDKDGATLIHYAVEVAAIQTIKLLILYKVDINLPDNYGWTPLHLAVQSKRTDVVRLLLVKGADKSIRNKDGNTPLDLCLHSGRDIRTYELIRLLKTLPKARLQNGNNLQTLNVRKL*

Protein Length: 401

Fln nts: CATTCACATCATCTCAAGCAAATGCAAAAAACAGCACAATATTTCAGAGGACGAGAGCTTAATACCCGAAGGATGGCGGGACTTACAGCAGGAGCTCGACATTTCAAAGAAGGAAAAGAAGAAGAGAACGAAG_-_ATGATGGAGTTAGAACAAAGCTTCCAGAGGAAAAGGGAAATCGAACTATTTAGGGAGGGTGCGTCGAAATTTAACACCATTAAATTACCTCCTTTGAATTTCTCAACACCGGATTCTGGCAATAAACAGACGTCGGAGGACGACAAGGTATTATCAACCCGCCTCATATCCTCAACGCCGGATTCTGACGATAATCAGACACAGGAAGATAATAAGGGATTCTCAACAAAGCTAGAATTCTCAAGCAAAGACACTGATTCAGAGCTTAGTGGTGAGACAGAGTCACTGAACGGAGAAAATAAGGTAGAAAATGAATCTGAAAACTTTTCTGTCAGTTATGAGCAGAAGGAAGCTGTAACTGATGACAAGGAAGAGACAGCAATTGGTTCTGTTCAAGATGAGCAGGAAGTAGATAATTCTGTTCCAGTGCAAGACGCCTTGGGTAGTTCTTCTAGTAAAAGAGTTTCTCCGAGAAATCCTCGGCTTGAGCTTGCTGGTGCAGGTTTTGAAGATATTATTAGGAGTTTCAGTGGAGAATACAAGGCGAAAGATAATGAAATCACAGAGGAAGAGCCACGGAAAGAGCGTCGACAGCTGTATACACCGGAGGAGAAGATTCTTTTAAATCAACGTACACCTGATTTTCAACGAGCCACATCAGCAAAATGGATACCTCTGCATGTATTTGCAACGGCAGGCCAATCTTATCTTTTAGATTTTCTGCTGACACACAATGTCGATATAAATTCTGTTGACAAGGATGGTTTGACTGCCCTTAATAAAGCTGTGTTGTGCAAGAAAGAGGGCATAGTCAGCTATCTTCTAAAAGCAGGAGGAAATGCTTTGATAAGAGATAAGGATGGTGCTACGTTAATACATTATGCAGTTGAAGTTGCAGCAATTCAAACAATCAAGCTTTTAATCCTTTACAAAGTAGATATCAACCTTCCCGATAATTATGGATGGACTCCTCTACATCTTGCTGTGCAAAGTAAGAGAACAGATGTTGTGAGGCTCCTGCTAGTTAAGGGTGCTGATAAGAGTATCCGAAATAAGGATGGAAATACACCTTTGGATCTTTGTTTGCACTCTGGGAGAGATATTAGAACATATGAATTGATAAGGTTGCTGAAGACATTACCGAAGGCTAGGTTACAAAATGGCAATAATTTGCAGACTCTGAATGTAAGAAAACTCTAAGGTAGTCAATTTTGACACAGACGTCATTTTCTTCCACAATAATTTTGAACTTGTTTCTATATTAAAACTGAGGAGATATCTTGCTTCAGCTGTTTAATTTTCTCTGCTTTTGAAGAATGTAAAATTTTGATCTTAGGAAAAGTTGAGAAGTTTAGACTAGTTTTA

Fln Alignment:

sp_v1.1_unigene3477___WIPLHVFATAGQSYLLDFLLTHNVDINSVDKDGLTALNKAVLCKKEGIVSYLLKAGGNALIRDKDGATLIHYAVEVAAIQTIKLLILYKVDINLPDNYGWTPLHLAVQSKRTDVVRLLLVKGADKSIRNKDGNTPL
A9NN39______________WTPLHSAVSSGHANVVEALLQAGADVSVANNGGRTALHYAASKGRVKIAQDLISNGANIRKKDKFGCTPLHRAASAGHPEICELLIEEGADVDATDKTGQTPLMNAVISNDKQIALLLVRHGADVDCEDNEGYTVL

SNPs (tot: 28)

Position	A %	C %	G %	T %	Probability
458	25			75	0.996473
641	25			75	0.996473
646	75	25			0.996473
650	75		25		0.996473
651	75		25		0.996473
654	25			75	0.996473
655	75	25			0.996473
656	75		25		0.996473
658	75	25			0.996473
697		33		66	0.997452
705	25			75	0.996473
710			25	75	0.996473
711	25		75		0.996473
713		25		75	0.996473
727	25		75		0.996473
811		20		80	0.995493
1089	20			80	0.995493
1091	20			80	0.995493
1092	20		80		0.995493
1093			20	80	0.995493
1094		80	20		0.995493
1099		80	20		0.995493
1102			20	80	0.995493
1215		25		75	0.996473
1216		25	75		0.996473
1264		20		80	0.995493
1265		20	80		0.995493
1266		20		80	0.995493

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain