SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene3470

Length: 1219 nt

Origin of reads: Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene3470

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Expansin n=5 Tax=Pinaceae RepID=Q9SWY1_PINTA	-	-	74%
FL-Next	tr=Expansin; Pinus taeda (Loblolly pine).	-	-	74%
Blast2go	expansin	-	-	80%

Source	InterPros	Term	Type	Identity
Blast2go	Expansin	IPR002963	-	80%
Blast2go	Expansin/pollen allergen, DPBB domain	IPR007112	-	80%
Blast2go	Pollen allergen/expansin, C-terminal	IPR007117	-	80%
Blast2go	Expansin/Lol pI	IPR007118	-	80%
Blast2go	Barwin-related endoglucanase	IPR009009	-	80%
Blast2go	Barwin-like endoglucanase	IPR014733	-	80%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: Q9SWY1

Fln msg:

Fln protein: MKTFAELLVALGVAFFIVNLLPPACGDDEPTLGWKHAHATFYGGSDASGTLGGACGYGDLYSQGYGTNTVALSTALFNDGLSCGGCYEIRCRMKADPQWCLPGTSVVVTATNFCPPNYAEANDNGGWCNPPLRHFDMAMPAFEQIAKVKGGIVPVRYRRVYCAKNGGIRFTINGQRYFIMVMVTNVGRAGDVISVSVKASNSDLWEPMVRNWGQNWQTGNSQLVGQSLSFSVTTSDGNTAISPEVAPPNWQFGQTFEGNQF*

Protein Length: 263

Fln nts: CGTCGTGACCTTGGTGTCCTTTGCTGAGAATCAATACCTCATTGTTCAATTATTTCTCAGTAGTACTGAGAATATTTTGGCCGGCGTTCAACGTTAATCAATCTCTGCGGTGTCGATTGTGGTTTGGTGGTTTCTCCGGCTAAATC_-_ATGAAGACATTCGCAGAGCTGCTAGTGGCGTTGGGCGTCGCATTCTTCATCGTCAATTTGCTTCCACCAGCTTGTGGAGATGATGAGCCGACGTTGGGGTGGAAACATGCTCACGCTACTTTCTATGGCGGATCAGATGCTTCGGGAACATTGGGAGGAGCCTGTGGATATGGAGATTTATACAGCCAAGGGTATGGAACGAACACTGTCGCTCTGAGTACCGCGTTGTTCAACGACGGGTTGAGCTGCGGAGGGTGCTACGAAATTCGATGCAGGATGAAGGCGGATCCACAGTGGTGCCTCCCAGGCACTTCTGTCGTTGTCACGGCCACCAATTTCTGCCCACCAAACTACGCCGAGGCCAATGACAACGGTGGGTGGTGCAACCCGCCTCTGCGCCACTTCGACATGGCCATGCCAGCTTTTGAGCAGATAGCCAAGGTCAAAGGGGGTATCGTACCTGTACGCTACAGAAGAGTGTACTGTGCGAAGAATGGAGGAATCCGATTCACAATAAATGGACAACGCTACTTCATAATGGTGATGGTGACCAACGTTGGAAGAGCGGGCGACGTTATCTCTGTATCAGTTAAAGCTTCCAACTCCGACCTGTGGGAACCAATGGTGCGCAATTGGGGCCAGAATTGGCAGACAGGCAATTCTCAGTTAGTTGGCCAAAGTCTCTCCTTCAGCGTCACCACCAGCGATGGCAACACGGCTATTTCCCCTGAAGTAGCCCCTCCTAACTGGCAGTTCGGCCAAACCTTTGAAGGAAATCAATTTTGA___ATATTCACATTTCTTCATCATCACCTCATGCTGCCTGCTCCAAAGTACAATCAGTAAATAAATATACAAATTATGTCATCTATTCTGTATGACCTGAATGGTTTTAGGCTAGGCAGGCCAATACAGACAAATTATATAGTTTGTTTTGTGAATATGTGACCAGAATAATTTGAAGCAAGGCGAGGAACTGATTGGATTGGTTTTCTTTTTGACCTGAGATTAAATTTGACTATGTAATATCTTTTTATCTAATAAAAAGTTTTTTGTTTTTCACAGCATTGGTATCC

Fln Alignment:

sp_v1.1_unigene3470___GWKHAHATFYGGSDASGTLGGACGYGDLYSQGYGTNTVALSTALFNDGLSCGGCYEIRCRMKADPQWCLPGTSVVVTATNFCPPNYAEANDNGGWCNPPLRHFDMAMPAFEQIAKVKGGIVPVRYRRVYCAKNGGIRFTINGQRYFIMVMVTNVGRAGDVISVSVKASNSDLWEPMVRNWGQNWQTGNSQLVGQSLSFSVTTSDGNTAISPEVAPPNWQFGQTFEGNQ
Q9SWY1______________GWESAHATFYGGSDASGTMGGACGYGNLYSQGYGTNTAALSTALFNDGLSCGACYEMRCN--DDPQWCLPGT-VTVTATNFCPPNNALPNDNGGWCNPPLQHFDMAEPAFLKIAKYRGGIVPILYTRVPCLRKGGIRFTVNGHSYFNLVLITNVGGAGDVHAVSIKGSRSG-WQPMSRNWGQNWQS-NSYLNGQSLSFQVTTSDGRTVVSNNVAPSNWQFGQTFEGSQ

SNPs (tot: 10)

Position	A %	C %	G %	T %	Probability
85		80	20		0.995493
173	83	16			0.994512
177	16		83		0.994512
179		16	83		0.994512
186		16	83		0.994512
595	85	14			0.993533
630	16			83	0.994512
634	20		80		0.995493
636	20		80		0.995493
677		25		75	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain