SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene3462

Length: 973 nt

Origin of reads: Biogeco_1 Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene3462

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Cl-channel clc-7 n=2 Tax=Populus trichocarpa RepID=B9N0H5_POPTR	-	-	55%
FL-Next	sp=Chloride channel protein CLC-c; Arabidopsis thaliana (Mouse-ear cress).	-	-	69%
Blast2go	chloride channel	-	-	82%

Source	InterPros	Term	Type	Identity
Blast2go	Chloride channel, voltage gated	IPR001807	-	82%
Blast2go	Chloride channel ClC-plant	IPR002251	-	82%
Blast2go	Chloride channel, core	IPR014743	-	82%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q96282

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 360 aas, your sequence is shorter than subject: 323 - 779

Fln protein: FVLSRAWITRLLK*SLHHQSSS*NIAGTKLAITNNFMLQKRYVLAFGVYAGSNFILVIFAAILCAYIAPAAAGSGIPEVKAYLNGIDAPGILSPSTLIVKILGSICAVSGSLYVGKEGPLVHTGACIASLLGQGGSKRYHLTWRWLRYFKNDRDRRDLITCGSAAGVAAAFRAPVGGVLFALEEVSSWWRSALLWRTFFTAAVVAVVLRALKDFCETGKCGLFGKGGLIMFDISSVKISYRTTDLLPVIILGIIGGLIGSLFNYLVGKILRVYNLINGRGPIFKLLLACTISILTSCCCFGLPWLAKCTPCPKGKLPEECPTA

Protein Length: 324

Fln nts: CGTTTGTCCTATCGAGAGCTTGGATTACGAGATTATTGAAATGATCTCTTCACCATCAATCTAGCAGTTGAAACATTGCTGGGACCAAGCTAGCAATTACCAATAATTTCATGCTACAGAAAAGGTATGTATTAGCATTTGGAGTATATGCCGGATCTAATTTTATTCTAGTTATATTTGCAGCAATACTTTGTGCCTATATTGCTCCAGCGGCTGCCGGATCTGGTATACCAGAAGTTAAAGCTTATTTGAATGGTATTGACGCTCCAGGAATTCTGTCTCCAAGCACACTGATAGTGAAGATTCTAGGTAGCATTTGTGCGGTCTCTGGTTCCTTATATGTAGGTAAGGAGGGACCTCTTGTGCATACTGGGGCATGCATAGCATCACTGTTGGGGCAGGGGGGCTCCAAACGGTACCATTTAACATGGAGATGGCTGCGGTATTTCAAAAATGATAGAGATAGACGTGATCTCATAACTTGTGGTTCTGCTGCTGGAGTTGCTGCTGCATTTCGTGCCCCTGTGGGTGGTGTTCTCTTTGCCCTTGAAGAAGTATCATCATGGTGGCGGAGTGCTCTTCTTTGGAGAACATTTTTCACTGCAGCAGTGGTTGCTGTGGTTTTGAGGGCACTCAAAGACTTCTGTGAAACAGGAAAATGTGGGCTCTTTGGAAAGGGTGGTCTGATAATGTTTGATATTAGCTCAGTGAAAATTTCCTATCGGACTACTGATCTTCTGCCAGTGATAATCCTTGGAATTATTGGGGGATTAATTGGAAGTCTTTTTAATTACCTTGTGGGCAAGATCCTAAGAGTTTATAATCTTATTAATGGGCGGGGACCTATTTTCAAATTGCTACTTGCATGCACCATTTCTATCCTTACATCTTGTTGCTGCTTTGGATTACCATGGCTTGCAAAATGCACACCATGCCCTAAAGGGAAGTTACCAGAAGAATGCCCTACAGCAGG

Fln Alignment:

sp_v1.1_unigene3462___NIAGTKLAITNNFMLQKRYVLAFGVYAGSNFILVIFXXXXXXXXXXXXXGSGIPEVKAYLNGIDAPGILSPSTLIVKILGSICAVSGSLYVGKEGPLVHTGACIASLLGQGGSKRYHLTWRWLRYFKNDRDRRDLITCGSXXXXXXXXXXXXXXXLFALEEVSSWWRSALLWXXXXXXXXXXXXXXXXKDFCETGKCGLFGKGGLIMFDISSVKISYRTTDXXXXXXXXXXXXXXXXXFNYLVGKILRVYNLINGRGPIFKLLLACTISILTSCCCFGLPWLAKCTPCPKGKLPEECPT
Q96282______________NIAGFKLLLIGNLMLKEKYFQAFFAFAGCNLILATAAASLCAFIAPAAAGSGIPEVKAYLNGIDAYSILAPSTLFVKIFGSIFGVAAGFVVGKEGPMVHTGACIANLLGQGGSKKYRLTWKWLRFFKNDRDRRDLITCGAAAGVAAAFRAPVGGVLFALEEAASWWRNALLWRTFFTTAVVAVVLRSLIEFCRSGRCGLFGKGGLIMFDVNSGPVLYSTPDLLAIVFLGVIGGVLGSLYNYLVDKVLRTYSIINEKGPRFKIMLVMAVSILSSCCAFGLPWLSQCTPCPIGIEEGKCPS

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
660	80		20		0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain