SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene3457

Length: 1299 nt

Origin of reads: Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene3457

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Peroxidase (Fragment) n=1 Tax=Spinacia oleracea RepID=P93551_SPIOL	-	-	54%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	55%
Blast2go	bacterial-induced peroxidase	-	-	70%

Source	InterPros	Term	Type	Identity
Blast2go	Plant peroxidase	IPR000823	-	70%
Blast2go	Haem peroxidase, plant/fungal/bacterial	IPR002016	-	70%
Blast2go	Haem peroxidase	IPR010255	-	70%
Blast2go	Peroxidases heam-ligand binding site	IPR019793	-	70%
Blast2go	Peroxidase, active site	IPR019794	-	70%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NST7

Fln msg:

Fln protein: MTTHIGHTLLILVSLIWCTGESAEAATRLGFYSSTCPDVESLVQSSVQFFLSSDISFAPSLLRMFFHDCFVQGCDASVLLDGPSAERTASANTGLRGFEVIMDAKSRVEAECPGIVSCADILALAARDAVVMTNGPSWDVPLGRMDGRRSLASDVAVNFPSPRDSIDALKQKFSARGLSTDDLVALSGGHTIGQADCGFFIDRLYNYKSTGMPDPNINRNSLRQLQSICPANGNGNSRVALDKGSKNTWDASYFQNLIAGNAVLESDVDLVSDPDTQRLVQTFANSVDSFNSAFTKSMVKLGNVGVKTASQGEIRRMCTVANF*

Protein Length: 325

Fln nts: GATTTTTGAGCTTAAAATTGCCCAAAAG_-_ATGACCACACATATTGGTCACACACTACTTATACTTGTGAGTTTGATATGGTGCACAGGGGAGTCCGCAGAAGCAGCCACCAGGCTGGGATTCTACTCTTCCACCTGCCCGGACGTAGAATCTCTGGTGCAATCCAGCGTGCAGTTCTTCCTCTCATCTGATATCAGTTTTGCTCCATCTCTGTTACGCATGTTCTTTCACGACTGCTTTGTACAAGGCTGCGATGCATCTGTATTGCTGGACGGTCCTTCGGCGGAGAGAACCGCTTCTGCTAATACAGGATTACGTGGTTTTGAGGTGATAATGGACGCGAAATCCCGTGTAGAAGCAGAATGCCCAGGAATCGTCTCGTGTGCTGATATACTTGCGCTTGCAGCTCGCGATGCCGTTGTTATGACCAATGGACCTTCATGGGACGTGCCATTAGGAAGAATGGATGGACGAAGATCGCTTGCATCTGACGTGGCAGTGAACTTTCCATCTCCCAGAGACTCCATCGACGCCCTAAAACAAAAGTTCTCTGCTAGGGGTCTCTCTACCGACGACCTTGTTGCTCTTTCAGGAGGTCACACAATTGGGCAGGCCGACTGTGGATTCTTCATCGACCGTTTATACAACTACAAGTCCACGGGAATGCCGGACCCAAACATAAATCGAAACTCACTGAGGCAACTCCAGAGCATTTGCCCTGCGAATGGAAACGGGAACAGTAGAGTAGCTCTTGACAAGGGCAGTAAAAATACGTGGGACGCAAGCTACTTCCAGAACCTTATCGCAGGAAATGCAGTGCTAGAATCTGATGTAGACCTCGTCTCTGACCCTGATACCCAGCGCCTTGTACAGACATTTGCAAACTCAGTCGACTCTTTCAACTCCGCCTTCACGAAATCCATGGTGAAGCTCGGTAACGTTGGTGTGAAGACAGCATCCCAAGGAGAGATCAGGAGAATGTGTACAGTCGCCAACTTTTAA___TGGCCACCACCATTTTCATCTCCTTTTTGAGTTTCGAAGCCCCCAGTGATAGAAAAGAGCCAGGTCCGTTGTTATTCGTAGTTTAAGGCATGACCTGGATATTTCTGGACTGGAGGCATGAAATCTACAATCAATCTGTAAATTACACTAATGTTTTGTGCATTGTGCTCGATATAATCCAACTTCTGGTTTCCGCATATATTTGGTACTATTGCTGTAATAAAAACTAGTTTCAGCATATATGGTATTGTGTACTATTGTTATACTAAAAATTAAACAGCTCGTCCTTTTTCAGTGAG

Fln Alignment:

sp_v1.1_unigene3457___TRLGFYSSTCPDVESLVQSSVQFFLSSDISFAPSLLRMFFHDCFVQGCDASVLLDGPSAERTASANTGLRGFEVIMDAKSRVEAECPGIVSCADILALAARDAVVMTNGPSWDVPLGRMDGRRSLASDVAVNFPSPRDSIDALKQKFSARGLSTDDLVALSGGHTIGQADCGFFIDRLYNYKSTGMPDPNINRNSLRQLQSICPANGNGNSRVALDKGSKNTWDASYFQNLIAGNAVLESDVDLVSDPDTQRLVQTFANSVDS-----FNSAFTKSMVKLGNVGVKTASQGEIRRMCTVAN
A9NST7______________TKVGFYSASCPKAESIVRSTVQTYFNADHTIAAGLLRLSFHDCFVQGCDGSILITGPSAERNSLTNLGLRGFEVIEDVKEQLESVCPVVVSCADILALAARDVVVLSNGPTWSVPTGRRDGLVSSSSDTA-NLPTPADSITVQKKKFADKGLTTEDLVTLVGAHTVGQSDCQIFRYRLYNFTATGNADPTITSSYLTQLQSLCPASGDGSKRVALDKGSQMYFDVSFFKNVRDGNAVLESDQRLWGDESTKAVVQNYAGSVRGILGFRFDFDFTKAMIKMSNIGVKTGTDGEIRKVCSAFN

SNPs (tot: 2)

Position	A %	C %	G %	T %	Probability
1196		88		11	0.923564
1238	66		33		0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain