SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene3446

Length: 3164 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene3446
CGTCGTGGGGTTTGCTTTCATGGGGAAGGGAGGCTATGGCCTTTTGACGGTGATGTGAACGGCGTAAAGAGTCGAGTTCTCACAAAATAACTATGATCCCCTCTCCCTTCAATTTATATTGATATGGGTGGAATGTCTGTGTGTGATTTGTGAGCAAAATCAACTGCTGTCTGCTGGATATACTTTTGCATTGAATTGGTAAATTACGGCGACTGGAAGAGAGATGGAGAGTCGCAATATGGACCACGCTGAGCTGACTACAGAGCAGGTTCTTAAAAGGGATATACCATGGGAGACTTACATGACTGCAAAGTTGATCAATGGAACATGTCTACAGTTGTTGAGACGTTATGATCATAGGCCTGAAAATGTTCAAGCAGCTTTACTTGATGATGATGGCCCTGCTTACATTCGAGTCTTTGTGGGTATTCTGCATGACATTAGCAAGGAGGAAACTGTAGAATATGTACTCGCTCTTATTGATGAAATGCTTACAGCAAACCCAAAACGAGCAAGACTTTTCCTTGACGATTCACTTTCAAATGAAGATGTTTATCAACCTTTTTTGAGGCTACTGTCAAAGGGGAACTGGTTCATCCAAGAGAAGAGCTGCAAAATACTCACTTTGATAATAAGTGCCAAGAAGAAATCCAGGGAAGACACTGTTATCTCTAATGGGGAAGCTTCAGGTTCAAAACAAACACATACTACCATGGATGATGTACTGAGCGGCTTGGTGGAATGGCTGTGTAATCAGCTGAGAAGACCGTCACATCCAAGTCGTGGGATACCAACAGCTGTGAGTTCCTTGGCAACATTGTTAAGGGAGCCTCTGGTTAGGTCACTATTTGTAAAAGCAGATGGCATGAAGCTCCTGACTCCTTTGATTTCACCAGCATCTGCTCAGCAGTATGTCCAGCTTCTTTATGAGACCTCTCTCTGCATATGGCTTCTTTCATATTATGATGCTGCTGTGGATGCCCTTGCTGCTACTCGCATTTTACCTCGTCTGGTGGAGGTTGTTAAGTGTTCCACAAAGGAAAAGGTCGTCAGAGTTGCTGTTTTAACACTGAAAAACTTGCTTTTCAAAGGGACATTTGCAAGTGAGATGGTGGATCTTGGGTTGCCACAAATTGTGCAAAACTTAAAATCCCAAGCCTGGAGTGATGAGGATCTAGTAGAAGCACTGAATTCTCTGGAAGAAGGATTGAAGGATAGTATTAAAAGGCTAAGTTCTTTTGACAAGTATAAACAGGAAGTTCTTCTTGGAAATCTTGATTGGTCGCCAATGCATAAGGATCCAGCATTCTGGCGTGAAAATATCAATAAATTTGAAGATAGTGACTTTCAGGTCTTACGTATATTAATTACAATCCTAGATACTTCTGGAGATTCAAGGGCATTGGCTGTGGCATGTTATGATATTTCTCAATTTATACAGTATCATCCGGCTGGGAAAGGCATTGTTACAGACCTGAAAGCTAAAGAGCGTGTCATTAAACTTATGGACCATGAGAGCTCAGAAGTGAGGAAGAATGCACTATTATGTGTGCAAAAACTTTTACTTAGTGCAAAATATGTTAGCTATTTGCAATCATAAATCATTCATTTGATTTAGTTTTATCTTGGTGGTTTAGGATTGTCAACCTAAAATGACATTCTCGAAAATGTTCAAGACATTCTTGAAGCAATCTGAGGGTCTCTCAGATAATTTAATCATAATAAGAGTAAAAAATTCTTGAATAGGTTCTCTATACTTTTTTGTAGTGTTTCCCAACTTGGCAGGGGCCAAACTGAGGTACAAATCTGAAGTCTGGAAAATATTGAAATTTGGTAATAGGCATGTTTATTTGTGCCCATAGTTATGCCGTTGAGTATTTGTAAACTAGCTGTATGGTGTCTTTTAATTTCTGAGGTGAACTACACCTATTTTGTTTGGATGTGAAGGTAAGTACTTTGGAAATTTCCCTATATTTTCCGGATTCCGGATTCCGGAGGAGCTTACAAAGAGCTTACAAATCCAATTACAGCTCCTCGTCCGTCAAACAAAGATCTCCCGAGAGACCCTGCAGAATATTTCGTGCTGCCGCGCTTTGATCTCGTAACCCATCATCTGTCCCAAAGCCCATCCCGATTTCTCTTGTTTTATCTCGGTGTCGGATCTCTTTCTCGGCTTCGCACAATTCCACTATGAATCCTGAATATGATTATTTGTTCAAGCTTCTCTTGATTGGAGATTCTGGAGTTGGCAAATCGTGTCTCCTTCTGAGATTTGCGGATGATTCATATCTGGAGAGCTACATCAGTACGATAGGAGTTGATTTTAAAATTCGAACAGTGGAGCAGGATGGAAAGACGATCAAGCTTCAAATTTGGGATACAGCAGGGCAAGAACGATTTAGAACAATTACAAGCAGCTATTATCGTGGTGCACATGGTATCATTGTGGTTTATGATGTTACCGACCAGGAGAGTTTCAATAATGTGAAGCAATGGTTGAATGAGATTGATCGCTATGCGAGTGAGAATGTCAACAAGTTGCTTGTTGGAAACAAATGTGATTTGACTGCTAATAGAGCTGTTGATTATGATACAGCCAAGGCGTTTGCGGATGAGATTGGCATTCCATTTTTGGAGACAAGTGCAAAGAATGCAACTAATGTGGAGCAGGCTTTCATGACGATGGCTGCTGAGATCAAGAACAGGATGGCAAGTCAGCCTGCCATGAATAGCAGCAGACCTGCTACTGTACAAATGAAAGGGCAGCCAGTTGTTCAGAAAAGTGGCTGTTGCTCATAAGACAATTCGTAGAATAATTTTTACTGCAATTGGTTTGATGAAGTGAAGTGCAAGATAATTGTATGTATTTTGGATCTCAGACAGGCAAGCTTTTCTTGCTGTTGAGATATTAACAATTGATAGACAACTAAAAACAAATTTATTGCAAGTTGGATCTTGTATTGTTTCCTGTCTGTGAAGGGCAGCAGCTTGCTTTTGTTCTTGATAATTTGTATAGAAATGGATTATTGTACTCGTGCCTAGTTTGTAAGATCATTCTTCTTAAGAGTCGCCAGCATTGTCACAGGTGGACTGCCAGATCTTAGAATCCTCTAAACTTTTACAGATTTTTTCTGCAATATGTTTGACATTCATTTTGCCCCCCG

Ace file of the UniGene sp_v1.1_unigene3446

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	vacuolar ATPase subunit H protein; K02144 V-type H+-transporting ATPase 54 kD subunit [EC:3.6.3.14]	-	-	72%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	96%
Blast2go	vacuolar atpase subunit h protein	-	-	86%

Source	ECs	Term	Type	e value	Identity
AutoFact	H(+)-transporting two-sector ATPase.	EC:3.6.3.14	-	0.0	72%

Source	KEGGs	Term	Identity
AutoFact	Oxidative phosphorylation	00190	72%
AutoFact	Photosynthesis	00195	72%
AutoFact	Methane metabolism	00680	72%
AutoFact	Metabolic pathways	01100	72%

Source	GOs	Term	Type	Identity
Blast2go	plant-type vacuole	GO:0000325	Cellular Component	86%
Blast2go	vacuolar membrane	GO:0005774	Cellular Component	86%
Blast2go	chloroplast	GO:0009507	Cellular Component	86%
Blast2go	plasma membrane	GO:0005886	Cellular Component	86%

Source	InterPros	Term	Type	Identity
Blast2go	Armadillo	IPR000225	-	86%
Blast2go	ATPase, V1 complex, subunit H	IPR004908	-	86%
Blast2go	ATPase, V1 complex, subunit H, C-terminal	IPR011987	-	86%
Blast2go	Armadillo-like helical	IPR011989	-	86%
Blast2go	Armadillo-type fold	IPR016024	-	86%
Blast2go	Cytochrome b5, heme-binding site	IPR018506	-	86%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LPC2

Fln msg:

Fln protein: MESRNMDHAELTTEQVLKRDIPWETYMTAKLINGTCLQLLRRYDHRPENVQAALLDDDGPAYIRVFVGILHDISKEETVEYVLALIDEMLTANPKRARLFLDDSLSNEDVYQPFLRLLSKGNWFIQEKSCKILTLIISAKKKSREDTVISNGEASGSKQTHTTMDDVLSGLVEWLCNQLRRPSHPSRGIPTAVSSLATLLREPLVRSLFVKADGMKLLTPLISPASAQQYVQLLYETSLCIWLLSYYDAAVDALAATRILPRLVEVVKCSTKEKVVRVAVLTLKNLLFKGTFASEMVDLGLPQIVQNLKSQAWSDEDLVEALNSLEEGLKDSIKRLSSFDKYKQEVLLGNLDWSPMHKDPAFWRENINKFEDSDFQVLRILITILDTSGDSRALAVACYDISQFIQYHPAGKGIVTDLKAKERVIKLMDHESSEVRKNALLCVQKLLLSAKYVSYLQS*

Protein Length: 460

Fln nts: CGTCGTGGGGTTTGCTTTCATGGGGAAGGGAGGCTATGGCCTTTTGACGGTGATGTGAACGGCGTAAAGAGTCGAGTTCTCACAAAATAACTATGATCCCCTCTCCCTTCAATTTATATTGATATGGGTGGAATGTCTGTGTGTGATTTGTGAGCAAAATCAACTGCTGTCTGCTGGATATACTTTTGCATTGAATTGGTAAATTACGGCGACTGGAAGAGAG_-_ATGGAGAGTCGCAATATGGACCACGCTGAGCTGACTACAGAGCAGGTTCTTAAAAGGGATATACCATGGGAGACTTACATGACTGCAAAGTTGATCAATGGAACATGTCTACAGTTGTTGAGACGTTATGATCATAGGCCTGAAAATGTTCAAGCAGCTTTACTTGATGATGATGGCCCTGCTTACATTCGAGTCTTTGTGGGTATTCTGCATGACATTAGCAAGGAGGAAACTGTAGAATATGTACTCGCTCTTATTGATGAAATGCTTACAGCAAACCCAAAACGAGCAAGACTTTTCCTTGACGATTCACTTTCAAATGAAGATGTTTATCAACCTTTTTTGAGGCTACTGTCAAAGGGGAACTGGTTCATCCAAGAGAAGAGCTGCAAAATACTCACTTTGATAATAAGTGCCAAGAAGAAATCCAGGGAAGACACTGTTATCTCTAATGGGGAAGCTTCAGGTTCAAAACAAACACATACTACCATGGATGATGTACTGAGCGGCTTGGTGGAATGGCTGTGTAATCAGCTGAGAAGACCGTCACATCCAAGTCGTGGGATACCAACAGCTGTGAGTTCCTTGGCAACATTGTTAAGGGAGCCTCTGGTTAGGTCACTATTTGTAAAAGCAGATGGCATGAAGCTCCTGACTCCTTTGATTTCACCAGCATCTGCTCAGCAGTATGTCCAGCTTCTTTATGAGACCTCTCTCTGCATATGGCTTCTTTCATATTATGATGCTGCTGTGGATGCCCTTGCTGCTACTCGCATTTTACCTCGTCTGGTGGAGGTTGTTAAGTGTTCCACAAAGGAAAAGGTCGTCAGAGTTGCTGTTTTAACACTGAAAAACTTGCTTTTCAAAGGGACATTTGCAAGTGAGATGGTGGATCTTGGGTTGCCACAAATTGTGCAAAACTTAAAATCCCAAGCCTGGAGTGATGAGGATCTAGTAGAAGCACTGAATTCTCTGGAAGAAGGATTGAAGGATAGTATTAAAAGGCTAAGTTCTTTTGACAAGTATAAACAGGAAGTTCTTCTTGGAAATCTTGATTGGTCGCCAATGCATAAGGATCCAGCATTCTGGCGTGAAAATATCAATAAATTTGAAGATAGTGACTTTCAGGTCTTACGTATATTAATTACAATCCTAGATACTTCTGGAGATTCAAGGGCATTGGCTGTGGCATGTTATGATATTTCTCAATTTATACAGTATCATCCGGCTGGGAAAGGCATTGTTACAGACCTGAAAGCTAAAGAGCGTGTCATTAAACTTATGGACCATGAGAGCTCAGAAGTGAGGAAGAATGCACTATTATGTGTGCAAAAACTTTTACTTAGTGCAAAATATGTTAGCTATTTGCAATCATAA___ATCATTCATTTGATTTAGTTTTATCTTGGTGGTTTAGGATTGTCAACCTAAAATGACATTCTCGAAAATGTTCAAGACATTCTTGAAGCAATCTGAGGGTCTCTCAGATAATTTAATCATAATAAGAGTAAAAAATTCTTGAATAGGTTCTCTATACTTTTTTGTAGTGTTTCCCAACTTGGCAGGGGCCAAACTGAGGTACAAATCTGAAGTCTGGAAAATATTGAAATTTGGTAATAGGCATGTTTATTTGTGCCCATAGTTATGCCGTTGAGTATTTGTAAACTAGCTGTATGGTGTCTTTTAATTTCTGAGGTGAACTACACCTATTTTGTTTGGATGTGAAGGTAAGTACTTTGGAAATTTCCCTATATTTTCCGGATTCCGGATTCCGGAGGAGCTTACAAAGAGCTTACAAATCCAATTACAGCTCCTCGTCCGTCAAACAAAGATCTCCCGAGAGACCCTGCAGAATATTTCGTGCTGCCGCGCTTTGATCTCGTAACCCATCATCTGTCCCAAAGCCCATCCCGATTTCTCTTGTTTTATCTCGGTGTCGGATCTCTTTCTCGGCTTCGCACAATTCCACTATGAATCCTGAATATGATTATTTGTTCAAGCTTCTCTTGATTGGAGATTCTGGAGTTGGCAAATCGTGTCTCCTTCTGAGATTTGCGGATGATTCATATCTGGAGAGCTACATCAGTACGATAGGAGTTGATTTTAAAATTCGAACAGTGGAGCAGGATGGAAAGACGATCAAGCTTCAAATTTGGGATACAGCAGGGCAAGAACGATTTAGAACAATTACAAGCAGCTATTATCGTGGTGCACATGGTATCATTGTGGTTTATGATGTTACCGACCAGGAGAGTTTCAATAATGTGAAGCAATGGTTGAATGAGATTGATCGCTATGCGAGTGAGAATGTCAACAAGTTGCTTGTTGGAAACAAATGTGATTTGACTGCTAATAGAGCTGTTGATTATGATACAGCCAAGGCGTTTGCGGATGAGATTGGCATTCCATTTTTGGAGACAAGTGCAAAGAATGCAACTAATGTGGAGCAGGCTTTCATGACGATGGCTGCTGAGATCAAGAACAGGATGGCAAGTCAGCCTGCCATGAATAGCAGCAGACCTGCTACTGTACAAATGAAAGGGCAGCCAGTTGTTCAGAAAAGTGGCTGTTGCTCATAAGACAATTCGTAGAATAATTTTTACTGCAATTGGTTTGATGAAGTGAAGTGCAAGATAATTGTATGTATTTTGGATCTCAGACAGGCAAGCTTTTCTTGCTGTTGAGATATTAACAATTGATAGACAACTAAAAACAAATTTATTGCAAGTTGGATCTTGTATTGTTTCCTGTCTGTGAAGGGCAGCAGCTTGCTTTTGTTCTTGATAATTTGTATAGAAATGGATTATTGTACTCGTGCCTAGTTTGTAAGATCATTCTTCTTAAGAGTCGCCAGCATTGTCACAGGTGGACTGCCAGATCTTAGAATCCTCTAAACTTTTACAGATTTTTTCTGCAATATGTTTGACATTCATTTTGCCCCCCG

Fln Alignment:

sp_v1.1_unigene3446___MESRNMDHAELTTEQVLKRDIPWETYMTAKLINGTCLQLLRRYDHRPENVQAALLDDDGPAYIRVFVGILHDISKEETVEYVLALIDEMLTANPKRARLFLDDSLSNEDVYQPFLRLLSKGNWFIQEKSCKILTLIISAKKKSREDTVISNGEASGSKQTHTTMDDVLSGLVEWLCNQLRRPSHPSRGIPTAVSSLATLLREPLVRSLFVKADGMKLLTPLISPASAQQYVQLLYETSLCIWLLSYYDAAVDALAATRILPRLVEVVKCSTKEKVVRVAVLTLKNLLFKGTFASEMVDLGLPQIVQNLKSQAWSDEDLVEALNSLEEGLKDSIKRLSSFDKYKQEVLLGNLDWSPMHKDPAFWRENINKFEDSDFQVLRILITILDTSGDSRALAVACYDISQFIQYHPAGKGIVTDLKAKERVIKLMDHESSEVRKNALLCVQKLLLSAKYVSYLQS
B8LPC2______________MESRNIDHAELTTEQVLKRDIPWETYMTAKLISGTCLQLLRRYDHRPENVQAALLDDDGPAYIRVFVGILRDISKEETVEYVLALIDEMLTANPKRARLFLDDSLSNEDIYQPFLRLLSKGNWFIQEKSCKILTLIISAKKKSREYTIISNGEASGSKQTHTTMDDVLRGLVDWLCNQLRRPSHPSRGIPTAVSSLATLLREPLVRSLFVKADGMKLLTPLISPASAQQYVQLLYETSLCIWLLSYYDAAVDALAATRTLPRLVEVVKCSTKEKVVRVGVLTLKNLLFRGTFASEMVDLGLPQIVQNLKSQAWSDEDLVEALNSLEEGLKDSIKRLSSFDKYKQEVLLGNLDWSPMHKDPVFWRENINKFEDNDFQVLRILITILDTSGESRALAVACYDISQFIQYHPAGRGIVTDLKVKERVIKLMDHESSEVRKNALLCVQKLLLSAKYVSYLQS

SNPs (tot: 31)

Position	A %	C %	G %	T %	Probability
123	66		33		0.997452
162		66		33	0.997452
251	50			50	1.0
283	85		14		0.993533
401		90		10	0.90298
691		11	88		0.999937
713	13	86			0.999973
755		15		84	0.999986
770	16		83		0.999991
821	11		88		0.923564
823			11	88	0.923564
824	88		11		0.923564
825	88		11		0.923564
1001		16		83	0.994512
1304	20		80		0.995493
1543		11		88	0.999937
1555	90			10	0.90298
1556	90		10		0.90298
1557	90			10	0.90298
1558	90	10			0.90298
1562	10			90	0.90298
1871		11	88		0.999952
1922		90	10		0.90298
2101			16	83	0.994512
2102		83	16		0.994512
2509		10		90	0.90298
3018	84	15			1.0
3031		2		97	0.97849
3124	25			75	1.0
3154	11	11		11	0.943531
3161	33	66			0.997452

SSRs (tot: 1)

Start position	End position	Sequence	Length
1976	1996	TTCCGGA TTCCGGA TTCCGGA	21

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain