SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene3440

Length: 1259 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene3440

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	DUF3598 domain containing protein	-	-	7.0e-28	22%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	92%
Blast2go	uncharacterized protein	-	-	0.0	67%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Domain of unknown function DUF3598	IPR022017	-	0.0	67%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NUM7

Fln msg: your sequence is shorter than subject: 399 - 532

Fln protein: MPVETEKVLQTQEPVIKPIWDTFASSISGFWRGVGAAFSPITAEMEPIFLGEINEYLYDCYTLSKVGAVYSPSEGNTKKIHRKINWVVANPLGEQGQGELTIQDDLIRAEEKMSEPMNHAMHANGTSTQVNQEEIVLHNVKEKQDLPIYETEVSFSSNVMEEDSMDLEPGLVFFEDGSYSRGPLMLQVGGSADDSSYYLSPTYKIEQCLVRGCHERLRLVHTIALKEGGTEVQLMRLAVYKEQWLGPSHLEYMSETGETPLEPLSQQKRISPSDLVGTWKVFEISATAILEDWEENTPEKRPPFVYLCMETSKRRSLPEIPEHFADEDVLDMQDITVLWLPGQITAYVDAKEDGVLSIGVGWYSDDGTNLVMERDYGADGKLLEVRSKTEVKRRWLDD*

Protein Length: 400

Fln nts: CCATGCCGGTGGAGACCGAGAAGGTTCTACAGACACAGGAACCTGTGATAAAACCAATATGGGACACGTTTGCAAGTAGCATCAGTGGCTTTTGGCGAGGTGTTGGAGCAGCATTTTCCCCAATAACTGCAGAAATGGAGCCAATTTTTCTGGGGGAAATAAATGAATATCTGTATGATTGTTATACTCTGTCAAAGGTGGGAGCAGTCTATTCCCCATCAGAAGGGAACACGAAGAAAATTCACAGGAAAATAAATTGGGTTGTTGCAAATCCCCTTGGAGAACAAGGACAAGGAGAGTTGACAATTCAAGACGATCTCATAAGAGCTGAGGAAAAGATGTCTGAACCCATGAACCATGCTATGCATGCAAATGGGACTTCAACTCAAGTCAACCAAGAGGAAATTGTACTACATAATGTTAAAGAGAAGCAAGATTTGCCTATCTATGAAACAGAAGTTTCATTTTCCAGTAATGTTATGGAGGAGGATTCAATGGACCTGGAGCCAGGGCTTGTATTCTTTGAGGATGGTTCCTACTCTAGAGGCCCACTGATGTTGCAGGTTGGAGGATCAGCAGATGATTCAAGTTACTACCTCTCTCCAACATACAAGATAGAGCAATGCTTAGTGAGAGGATGTCACGAGAGGCTGCGCCTTGTGCACACTATTGCGCTAAAGGAAGGTGGTACTGAAGTGCAGCTTATGAGACTAGCTGTTTACAAAGAACAATGGTTAGGACCAAGCCATTTAGAATATATGAGTGAGACGGGAGAAACCCCATTAGAGCCACTCTCACAGCAAAAACGGATTTCACCATCAGATCTTGTTGGAACATGGAAGGTGTTTGAAATCAGTGCCACTGCTATCTTAGAAGATTGGGAGGAAAATACACCTGAAAAGAGGCCACCATTTGTGTACCTGTGTATGGAGACTTCAAAGAGGAGGAGTCTTCCTGAAATTCCTGAGCATTTTGCTGATGAAGATGTCTTAGACATGCAAGATATTACAGTTCTTTGGTTGCCTGGTCAAATTACAGCATATGTCGATGCAAAAGAAGATGGTGTGTTGAGTATAGGCGTTGGATGGTATTCTGATGACGGAACAAACCTTGTCATGGAGAGGGACTATGGTGCTGATGGGAAGCTCCTAGAGGTTCGCTCTAAGACTGAAGTCAAGAGAAGGTGGTTGGATGACTAG___ATGTAATATAAGCCCCTACAATAACACTTTTGGTAACAAATAGTGTTCTACAAATTGGAA

Fln Alignment:

sp_v1.1_unigene3440___MPVETEKVLQTQEPVIKPIWDTFASSISGFWRGVGAAFSPITAEMEPIFLGEINEYLYDCYTLSKVGAVYSPSEGNTKKIHRKINWVVANPLGEQGQGELTIQDDLIRAEEKMSEPMNHAMHANGTSTQVNQEEIVLHNVKEKQDLPIYETEVSFSSNVMEEDSMDLEPGLVFFEDGSYSRGPLMLQVGGSADDSSYYLSPTYKIEQCLVRGCHERLRLVHTIALKEGGTEVQLMRLAVYKEQWLGPSHLEYMSETGETPLEPLSQQKRISPSDLVGTWKVFEISATAILEDWEENTPEKRPPFVYLCMETSKRRSLPEIPEHFADEDVLDMQDITVLWLPGQITAYVDAKEDGVLSIGVGWYSDDGTNLVMERDYGADGKLLEVRSKTEVKRRW
A9NUM7______________MPVETEKVLQTQEPVIKPIWDTFASSISGFWQGVGAAFSPITAEMEPISLGKINEYLYDCYTLSKVGAVDSPSQGSNKKIHRKINWVVANPLGEQGQGELTIQDDLIRAEENMSEPMDHATDANGTSTQVNQEKIVLHSVKEKQDLPIYETKVSFSSNVMEEDSMDLEPGLVFFEDGSYSRGPLMLQVGGSADDSSYYLSPTYKIEQCLVRGCHKRLHLVHTIALREGGTEVQLMRLAVYKEQWIGPSHLEYTSETGETLLEPISQQRRISPSELVGTWKVFEISATAILEDLDENTPEKRPPFVYLCMETLKRRNLPDVPEHFADEDALDMQDITVLWLPGQITAYVDTKEDGVLSIGVGWYSDDGTNLVMERDYGADGKLLEVRSKTEVKRRW

SNPs (tot: 22)

Position	A %	C %	G %	T %	Probability
804	83			16	0.994512
974		85		14	1.0
1048		10		89	0.999919
1051		63	5	31	1.0
1062	75	12			0.999931
1069		9		90	0.999872
1070	4		61	33	1.0
1072		10	90		0.999898
1073			10	90	0.999898
1078		10		90	0.999898
1079	90	10			0.999898
1081	90			10	0.999898
1085			89	10	0.999919
1086			10	89	0.999919
1088		10	89		0.999919
1089	10		89		0.999919
1090	89	10			0.999919
1092		10	89		0.999919
1093	10		89		0.999919
1108	29	70			1.0
1154		61		38	1.0
1163		61		38	1.0

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain