SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene3432

Length: 1190 nt

Origin of reads: Biogeco_1 Uagpf Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v1.1_unigene3432 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	similar to cysteine protease Cp5	-	-	65%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	66%
Blast2go	protein	-	-	73%

Source	GOs	Term	Type	e value	Identity
Blast2go	catalytic activity	GO:0003824	Molecular Function	0.0	73%

Source	InterPros	Term	Type	Identity
Blast2go	Peptidase, cysteine peptidase active site	IPR000169	-	73%
Blast2go	Peptidase C1A, papain C-terminal	IPR000668	-	73%
Blast2go	Peptidase C1A, papain	IPR013128	-	73%
Blast2go	Proteinase inhibitor I29, cathepsin propeptide	IPR013201	-	73%

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: coniferopsida.fasta

Fln subject: A9P285

Fln msg: STOP codon was not found. Distance to subject end: 11 aas,

Fln protein: MGYSCYLCSVVSLLLLASSWSVDAWHSFSILEYEAEDLLSEDRLLRLFESWQSKHGKLYHSLQEEVKRLEIFKKNLDYIEAHNRNRRSSKKRSGHWLGLNKFADLTNEEFKAIYSKKSKKPAKSPLQLERPRLDTCDAPSSLDWRKKGVVTAVKNQGDCGSCWSFSSTGAIEGINAISTGDLISLSEQELVDCDSTNDGCDGGYMDYAFEWVIQNGGIDTEADYPYTGEDGTCNTTKEGYKVVTIDGYTDVAETDAAVLCAVVQQPVSVGMDGSAIDFQLYSGGIYDGDCSSNPDDIDHAVLIVGYSSEDDVDYWIVKNSWGTDWGLDGYFYIERNTDIEYGVCAINAMASYPTKEETSPGPEPSPSSTPPPT

Protein Length: 374

Fln nts: CGTCGTGACCTTGGCTGTCACTCAATATTTAGGTCTTCTGTTTTCCTCACTGGACACAGATAATTTACC_-_ATGGGCTATAGCTGTTATCTGTGCAGTGTGGTGTCTCTCCTCCTCCTGGCATCTTCTTGGTCAGTGGATGCATGGCACTCATTTTCAATTCTGGAATATGAGGCTGAGGACCTCCTTTCTGAAGACAGATTGTTGAGACTTTTTGAGTCATGGCAGAGCAAACATGGCAAGCTTTACCACAGCTTGCAGGAGGAAGTCAAGAGGCTGGAAATCTTCAAGAAGAATCTGGACTACATTGAGGCTCACAACAGAAACAGAAGAAGCAGCAAGAAGCGTTCCGGCCACTGGTTGGGTCTCAATAAGTTCGCCGATCTGACGAATGAGGAGTTCAAGGCTATTTATTCCAAAAAGTCCAAGAAGCCTGCAAAATCTCCTTTACAGTTGGAGCGGCCTCGGCTTGATACATGTGATGCTCCTTCGTCTCTTGATTGGAGAAAGAAGGGCGTTGTCACAGCAGTCAAGAATCAAGGGGATTGTGGAAGTTGTTGGTCATTCTCATCAACGGGAGCAATAGAAGGGATCAATGCGATATCAACAGGGGACCTTATAAGCTTGTCTGAACAAGAGTTGGTTGATTGTGATTCAACCAATGATGGGTGTGATGGAGGTTATATGGATTATGCGTTTGAATGGGTAATACAAAATGGCGGCATTGACACAGAAGCAGACTACCCATACACTGGTGAGGATGGTACTTGCAACACTACAAAGGAAGGATACAAAGTGGTCACCATAGACGGTTACACTGACGTGGCAGAAACCGACGCCGCAGTCCTGTGTGCTGTTGTCCAACAACCAGTCAGCGTCGGAATGGATGGCTCCGCCATCGACTTTCAGCTCTACAGCGGGGGGATATACGATGGTGATTGTTCGAGCAATCCAGACGACATCGACCACGCAGTACTTATCGTCGGCTATTCCTCTGAAGACGATGTGGACTACTGGATCGTCAAGAATTCATGGGGTACAGATTGGGGACTGGATGGATACTTTTACATAGAGAGAAACACAGATATTGAATATGGCGTCTGCGCTATCAATGCAATGGCCTCCTATCCCACCAAGGAGGAAACCTCGCCCGGTCCCGAACCATCCCCTTCCTCGACACCACCACCGACCAC

Fln Alignment:

sp_v1.1_unigene3432___WQSKHGKLYHSLQEEVKRLEIFKKNLDYIEAHXXXXXXXXXXSGHWLGLNKFADLTNEEFKAIYXXXXXXXXXXPLQLE------RPRL--------DTCDAPSSLDWRKKGVVTAVKNQGDCGSCWSFSSTGAIEGINAISTGDLISLSEQELVDCDSTNDGCDGGYMDYAFEWVIQNGGIDTEADYPYTGEDGTCNTTKEGYKVVTIDGYTDVAETDAAVLCAVVQQPVSVGMDGSAIDFQLYSGGIYDGDCSSNPDDIDHAVLIVGYSSEDDVDYWIVKNSWGTDWGLDGYFYIERNTDIEYGVCAINAMASY
A9P285______________WLGRHGKLYGSHEEKARRLQIFRTNLQYIHAHNKNSNSSFR-----LGLNKFADLTNEEFKTRYFGKNSKQWRDRRRTELEGAELRPVLKQTVGSQSSSCSIASSLDWRKKGAVTGVKDQAQCGSCWAFSTTGAIEGVNFISTGKLVSLSEQELVACDATNYGCEGGDMDYAFTWVIQNGGIDTEKDYSYTGVDSTCNTNKEAKKIVSIDGYTDVSPDDSALLCAAGSQPVSVGIDGSAIDFQLYTGGIYDGDCSGNPDDIDHAVLVVGYSAKNGKDYWIVKNSWGTDWGLEGYFYILRNTELPYGVCAINAMASY

SNPs (tot: 20)

Position	A %	C %	G %	T %	Probability
360		33	66		1.0
432	83		16		0.999991
437		83		16	0.999991
500		81		18	0.999994
506		81	18		0.999994
507	18	81			0.999994
508	81		18		0.999994
511		16		83	0.999991
513	83		16		0.999991
516	16			83	0.999991
517	16	83			0.999991
518		83	16		0.999991
519	83		16		0.999991
526		83	16		0.999991
594		71		28	1.0
1027		10		90	0.90298
1031			90	10	0.90298
1053	88	11			0.923564
1058		88		11	0.923564
1132		75	25		1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain