SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene3423

Length: 2159 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene3423
CGTCGTGACCTTGGCCGTCGTGACCTTGGCTGTCACTCAGATTTAACCTTTCGCTATTGCCTGCCAACACGGGAAGCGATCGTTCAACTGTGGAAGACGGGATGTCACCTGTTCGTTCGCAGGAGCCTTCCAATCCGGATGAAGGGGAACCCAAGAGCGAGTTGATGATGTTACAGGTGGAGCTCAACCGTATGAACGAAGAAAACCAGAGGCTAAGACTCATGTTGAACTACGTAAGCAAGAACTACGGTAATCTGCAGATGCACCTTATGTCCGTTATGCAGCAACAACCTCCGCCAGAGAAGGTGGAAGAGAAATTGAATGGATCGTCGGAGGGAGTGAAGGTGGATGTAGCCGGCCCCGTGCAACGACAGTTTTTGGATCTCGTACCCATCTCGAGCCACGGGACCGATTCCCAACATTCTCTCTCCTCCGATACCCAGGATGCCGACGAGGTTGAAGAGACCGCTAAGTCCATTAACAATGAAGTCCTCTCAAAGAAACGCGACGTGGCCACCGCTAATTCCACGGATAAGCCACGTACTTGTGATGTCCGAGTCCAACAACAACAACAACGACCTGGTAACGATCCTGCTGCTAATTCGCCTACTGCTTTGAACGCCCAAGAAAAGGGCCACCCCGATAGCCCCGATCATGAGTCCTGGACTGCTAACAAAGCTCAGAAAGTGGCCAATAAGTGCGCTGTTGATCAAACCGAAGCCACCATCAGAAAAGCCAGAGTTTCAGTCCGGGCCAGATCCGAGGCTCCCATGATAAGCGATGGGTGCCAATGGAGAAAATACGGGCAGAAGATGGCAAAGGGCAATCCATGCCCGAGAGCGTACTACCGATGCACTATGGCTGTTGGATGCCCCGTTCGCAAACAGGTTCAGAGGTGCGCCGAGGACAGGTCAGTTCTGGTAACAACATACGAGGGAAGTCATAATCACCCGCTACCGCCTGCAGCTACAGCCATGGCATCAACCACGTCAGCAGCTGCCTGCATGCTTCTTTCAGGCTCTACAACAAGCAACGACGGAGGCTTCAATTCGAGTTTCATGCAGGCCGCCGCAGGAAGCCTAATGTCGTGCTCACCCGCCTCCATGGCCACCATCTCTGCCTCCGCTCCATTTCCTACTGTCACGCTCGACCTAACGCAAAACCCTAACCCTAATATGTATCATCGACAGCCCTCCGGCTTCCCCATGCCCCTCGGAGGTTTCCCACAACTACCCTCACACCCACCTCAGATCTTCTCTCACTCCCTCTTCAATACTTCCAAATTCGCTCCCCTTAGCGGTCAGCAGTTCGATCCGCAGCAACAGCAGGTACCCCACTTTTCAGGTCACCCGATGCAGCAGCAGACTCATATGCCGGTGCCCATTTCTCAATACAAAGCACCACAATCGTCTCTAATGGACACTGTTAGTGCAATTACAGCAGATCCCAACTTCACTGCCGCCCTTGCAGCTGCCATCACGTCAATAATTAGCGGCCAGTCCAACAACGCCAACACTATTCCATCGCCGGCTCCTCCCTGTGCCAGGGCTGATAATCCTGCTTCGGCTAAATTGCTCCACTGATTCTTAGACCGTAATTTATCTTCTGCCATGGAGGACCAATCTTTTTGCAGAGGGACTCAAATTCTTTGCAGATGTAACACTTGTGTCTGTCTACGGAGACGGTCATTCGGTGGAGTAACATGATTTGTTGAGATGTCATTACAAGTGCAGGAATAGCCAATTTGGGGTACATGTTGTGTTGATAGTCATCAGTATAGAACAGAGGCCAAACATTCTTTCATACACAGGGTTTTCTCCAGAGTTTGTATCTGGTTGGAACACAGCTAATATATACATCACTTTTCAAAGAAGAATAAGGAGAGAGATACTGGCTTTGTGAATAGACGTGTCACATCACATTTCATGACTACATTCTTTTCAGCTGTATCCCACTTGAACTTGAGGTCGCAGGCCTATCCTGAAATACCACTACAACACGGCTTGGCTGCCATTACTTGAAATGACAAAGGTTATTGTGAATATGCTAGGAGATCACTTTTACCTTCAGATCCAGAGCTATATAATTTGCTATTTTTGCATAATTTATTTGTTTAGAGGTTTACAAAATGTATGGTCAGACATAGCGGTAATCATCAA

Ace file of the UniGene sp_v1.1_unigene3423

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	WRKY transcription factor, putative n=1 Tax=Ricinus communis RepID=B9RXH5_RICCO	-	-	44%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	34%
Blast2go	wrky transcription	-	-	58%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5ABY6

Fln msg: your sequence is longer than subject: 494 - 411

Fln protein: MSPVRSQEPSNPDEGEPKSELMMLQVELNRMNEENQRLRLMLNYVSKNYGNLQMHLMSVMQQQPPPEKVEEKLNGSSEGVKVDVAGPVQRQFLDLVPISSHGTDSQHSLSSDTQDADEVEETAKSINNEVLSKKRDVATANSTDKPRTCDVRVQQQQQRPGNDPAANSPTALNAQEKGHPDSPDHESWTANKAQKVANKCAVDQTEATIRKARVSVRARSEAPMISDGCQWRKYGQKMAKGNPCPRAYYRCTMAVGCPVRKQVQRCAEDRSVLVTTYEGSHNHPLPPAATAMASTTSAAACMLLSGSTTSNDGGFNSSFMQAAAGSLMSCSPASMATISASAPFPTVTLDLTQNPNPNMYHRQPSGFPMPLGGFPQLPSHPPQIFSHSLFNTSKFAPLSGQQFDPQQQQVPHFSGHPMQQQTHMPVPISQYKAPQSSLMDTVSAITADPNFTAALAAAITSIISGQSNNANTIPSPAPPCARADNPASAKLLH*

Protein Length: 495

Fln nts: CGTCGTGACCTTGGCCGTCGTGACCTTGGCTGTCACTCAGATTTAACCTTTCGCTATTGCCTGCCAACACGGGAAGCGATCGTTCAACTGTGGAAGACGGG_-_ATGTCACCTGTTCGTTCGCAGGAGCCTTCCAATCCGGATGAAGGGGAACCCAAGAGCGAGTTGATGATGTTACAGGTGGAGCTCAACCGTATGAACGAAGAAAACCAGAGGCTAAGACTCATGTTGAACTACGTAAGCAAGAACTACGGTAATCTGCAGATGCACCTTATGTCCGTTATGCAGCAACAACCTCCGCCAGAGAAGGTGGAAGAGAAATTGAATGGATCGTCGGAGGGAGTGAAGGTGGATGTAGCCGGCCCCGTGCAACGACAGTTTTTGGATCTCGTACCCATCTCGAGCCACGGGACCGATTCCCAACATTCTCTCTCCTCCGATACCCAGGATGCCGACGAGGTTGAAGAGACCGCTAAGTCCATTAACAATGAAGTCCTCTCAAAGAAACGCGACGTGGCCACCGCTAATTCCACGGATAAGCCACGTACTTGTGATGTCCGAGTCCAACAACAACAACAACGACCTGGTAACGATCCTGCTGCTAATTCGCCTACTGCTTTGAACGCCCAAGAAAAGGGCCACCCCGATAGCCCCGATCATGAGTCCTGGACTGCTAACAAAGCTCAGAAAGTGGCCAATAAGTGCGCTGTTGATCAAACCGAAGCCACCATCAGAAAAGCCAGAGTTTCAGTCCGGGCCAGATCCGAGGCTCCCATGATAAGCGATGGGTGCCAATGGAGAAAATACGGGCAGAAGATGGCAAAGGGCAATCCATGCCCGAGAGCGTACTACCGATGCACTATGGCTGTTGGATGCCCCGTTCGCAAACAGGTTCAGAGGTGCGCCGAGGACAGGTCAGTTCTGGTAACAACATACGAGGGAAGTCATAATCACCCGCTACCGCCTGCAGCTACAGCCATGGCATCAACCACGTCAGCAGCTGCCTGCATGCTTCTTTCAGGCTCTACAACAAGCAACGACGGAGGCTTCAATTCGAGTTTCATGCAGGCCGCCGCAGGAAGCCTAATGTCGTGCTCACCCGCCTCCATGGCCACCATCTCTGCCTCCGCTCCATTTCCTACTGTCACGCTCGACCTAACGCAAAACCCTAACCCTAATATGTATCATCGACAGCCCTCCGGCTTCCCCATGCCCCTCGGAGGTTTCCCACAACTACCCTCACACCCACCTCAGATCTTCTCTCACTCCCTCTTCAATACTTCCAAATTCGCTCCCCTTAGCGGTCAGCAGTTCGATCCGCAGCAACAGCAGGTACCCCACTTTTCAGGTCACCCGATGCAGCAGCAGACTCATATGCCGGTGCCCATTTCTCAATACAAAGCACCACAATCGTCTCTAATGGACACTGTTAGTGCAATTACAGCAGATCCCAACTTCACTGCCGCCCTTGCAGCTGCCATCACGTCAATAATTAGCGGCCAGTCCAACAACGCCAACACTATTCCATCGCCGGCTCCTCCCTGTGCCAGGGCTGATAATCCTGCTTCGGCTAAATTGCTCCACTGA___TTCTTAGACCGTAATTTATCTTCTGCCATGGAGGACCAATCTTTTTGCAGAGGGACTCAAATTCTTTGCAGATGTAACACTTGTGTCTGTCTACGGAGACGGTCATTCGGTGGAGTAACATGATTTGTTGAGATGTCATTACAAGTGCAGGAATAGCCAATTTGGGGTACATGTTGTGTTGATAGTCATCAGTATAGAACAGAGGCCAAACATTCTTTCATACACAGGGTTTTCTCCAGAGTTTGTATCTGGTTGGAACACAGCTAATATATACATCACTTTTCAAAGAAGAATAAGGAGAGAGATACTGGCTTTGTGAATAGACGTGTCACATCACATTTCATGACTACATTCTTTTCAGCTGTATCCCACTTGAACTTGAGGTCGCAGGCCTATCCTGAAATACCACTACAACACGGCTTGGCTGCCATTACTTGAAATGACAAAGGTTATTGTGAATATGCTAGGAGATCACTTTTACCTTCAGATCCAGAGCTATATAATTTGCTATTTTTGCATAATTTATTTGTTTAGAGGTTTACAAAATGTATGGTCAGACATAGCGGTAATCATCAA

Fln Alignment:

sp_v1.1_unigene3423___AKSINNEVLSKKRDVA-TANSTDKPRTCDVRVQQQQQRPGNDPAANSPTALNAQEKGHP-------DSPDHESWTANKAQKVANKCAVDQTEATIRKARVSVRARSEAPMISDGCQWRKYGQKMAKGNPCPRAYYRCTMAVGCPVRKQVQRCAEDRSVLVTTYEGSHNH
D5ABY6______________SKAWKNELLERSSSASGVTDLSDPSSTAQVQSSSRLDSLGTPELSSTLASDDDMEDGGTNDSKSLGDDGDENESDSKRRKKENNTVDIVAASRAIREPRVVVQTTSEIDILDDGYRWRKYGQKVVKGNPNPRSYYKCTNA-GCPVRKHVERASHDPKAVITTYEGKHNH

SNPs (tot: 113)

Position	A %	C %	G %	T %	Probability
51		80	20		0.995493
53		20		80	0.995493
54			20	80	0.995493
55		80		20	0.995493
57	20	80			0.995493
58		20		80	0.995493
59	80	20			0.995493
63		80	20		0.995493
67		80		20	0.995493
71	80			20	0.995493
148	83	16			0.994512
150			83	16	0.994512
151		16	83		0.994512
153	83			16	0.994512
154	83		16		0.994512
155	16	83			0.994512
158	83			16	0.994512
159	83			16	0.994512
165	83			16	0.994512
168		16		83	0.994512
169	16		83		0.994512
170	83	16			0.994512
172		16	83		0.994512
407		83	16		0.994512
408	83			16	0.994512
411			83	16	0.994512
417	80			20	0.995493
419			20	80	0.995493
420		80	20		0.995493
422		80		20	0.995493
423	80		20		0.995493
424	80			20	0.995493
427		20		80	0.995493
451		16		83	0.994512
453		83		16	0.994512
457		83		16	0.994512
460		16	83		0.994512
461		16	83		0.994512
465	83	16			0.994512
466	83			16	0.994512
468	83			16	0.994512
469		16	83		0.994512
473			83	16	0.994512
543		75	25		0.996473
544	75			25	0.996473
555	75	25			0.996473
562		25	75		0.996473
568	83		16		0.994512
569	66	16		16	0.988813
570		83		16	0.994512
571	66	16	16		0.988813
572	83			16	0.994512
573		83	16		0.994512
575	83	16			0.994512
577	83			16	0.994512
578	83			16	0.994512
579		83	16		0.994512
580	83		16		0.994512
581	83	16			0.994512
582		83		16	0.994512
584	83			16	0.994512
589		16	83		0.994512
590	16			83	0.994512
686			42	57	1.0
759	6		81	12	0.999943
762	87			12	0.999964
769	87			12	0.999964
875	53	46			1.0
926		9	90		0.999872
929	90	9			0.999872
930	90		9		0.999872
931		90		9	0.999872
932	89		10		0.999919
935	88	11			0.999937
937	88			11	0.999937
938		88	11		0.999937
940	88	11			0.999937
941			88	11	0.999952
943			88	11	0.999952
944	88	11			0.999952
946		11	88		0.999952
962	88			11	0.999952
963		88		11	0.999952
967		88	11		0.999952
973		88		11	0.999952
974			11	88	0.999952
1169	25	75			0.996473
1246	66			33	1.0
1247		66	33		1.0
1248		66		33	1.0
1324	66		33		1.0
1325	33		66		1.0
1773	81	18			1.0
1777	81		18		1.0
1779		81	18		1.0
1782		18		81	1.0
1783	81	18			1.0
1785	81			18	1.0
1788	81		18		1.0
1790	81			18	1.0
1792	70	15		15	1.0
1793		15	85		1.0
1794	15		70	15	1.0
1796		85		15	1.0
1797	85		15		1.0
1799	80	20			1.0
1801	85			15	1.0
1803			15	85	1.0
1806	3		15	80	1.0
1809	84		3		1.0
1813	84			12	1.0
1999		7		92	0.999532
2003	62	37			1.0

SSRs (tot: 1)

Start position	End position	Sequence	Length
561	576	CAA CAA CAA CAA CAA C	16

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain