SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene3418

Length: 1367 nt

Origin of reads: Biogeco_1 Uagpf Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v1.1_unigene3418 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	RIN4-like protein n=2 Tax=Malus x domestica RepID=D2D0J2_MALDO	-	-	5.0e-21	36%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	82%
Blast2go	rpm1-interacting protein 4	-	-	0.0	47%

Source	GOs	Term	Type	e value	Identity
Blast2go	innate immune response	GO:0045087	Biological Process	0.0	47%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Pathogenic type III effector avirulence factor Avr cleavage site	IPR008700	-	0.0	47%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5ADF7

Fln msg: Separated hits, possible frame ERROR between 576 and 578,

Fln protein: MARPTHVPKFGDWTIEQDTPYTTVFENARVGRGVGGKIINPNDPEENPTGFAHVVQRNNIAAQLPRKNSGPEDSIPGRSHPSPRRGTDSELNPTHVSKPHHEKRSSKEDGGIRRHVESASPGRRGLGQSPGHRYAxxTKNLHTRDCGTGEHHYQSQDQSPAHHLYRGFGNKPGAEGKFSPSTTGQKSQGGNIQTNETLGRGAPLPSVGALIESSPESHDGYTYIFNKAREEKQTRGTTKIPTIPPETPPRDISNKQESVPSQRSSSCCCFKPGAAD*

Protein Length: 278

Fln nts: TTGTTTTCCACCCCAAATCTTCGACTCGTAAGGGTGTTTTTGGGAATTATTCTTATTCTTAAATTGATCAGAAGTAGGAAGAGTACGCATTTCAGTGGGTGCGACGAAGAACATCCACAGCGACAATTTGTTACAAAACCATCACCATAATTCCAGAACGAATCGAAT_-_ATGGCGCGGCCAACGCATGTTCCAAAGTTCGGGGATTGGACTATTGAACAAGATACTCCTTACACAACTGTTTTTGAGAATGCCCGTGTTGGTAGAGGTGTAGGTGGGAAGATTATTAATCCCAATGATCCTGAAGAAAATCCCACTGGCTTTGCACACGTTGTCCAGAGAAACAATATTGCAGCACAGCTGCCCAGGAAAAATTCTGGTCCAGAGGACAGCATTCCAGGTAGATCACACCCTTCTCCTAGAAGAGGAACTGATTCAGAACTAAATCCTACACATGTATCAAAGCCTCACCATGAAAAACGGTCTAGCAAGGAAGATGGGGGTATCAGACGCCATGTTGAATCAGCATCTCCTGGTCGAAGAGGACTGGGGCAGTCACCTGGCCACCGATATGCAAAxxxAACAAAAAATTTACACACACGGGATTGTGGTACTGGGGAACATCATTATCAGAGTCAGGATCAATCTCCAGCACATCACTTATATCGAGGATTTGGGAACAAACCTGGAGCAGAGGGCAAGTTCTCACCATCAACAACTGGGCAAAAGTCACAGGGTGGAAACATACAAACCAATGAAACTCTTGGCAGAGGTGCACCTCTTCCCAGTGTTGGTGCCTTGATTGAAAGCAGCCCTGAATCTCATGATGGATATACATATATATTTAACAAAGCAAGGGAAGAAAAGCAGACAAGAGGAACAACCAAAATTCCAACAATACCACCTGAAACTCCACCCCGTGATATCAGTAACAAGCAAGAAAGTGTGCCATCCCAAAGGTCATCGTCTTGTTGTTGCTTCAAACCAGGAGCCGCTGATTGA___GTAAATGATGTTCGCCATCAGATCAGGATTTTTGACTGCCCTTCTAAAGAAGTCAACAGTCATTATTTCATTACTGGCATTTAATGTTCCATATCCGGCAGTTTATCCTCTATCCTCGTGAATGTGAAATATGTGCAATCTGAGATCAATTCAGCTTTTCCAGACTGGTGCATATGCACCTTTCTGGTGATTGTTACATAACTATGCCTCACAGGATGTTTGTTCTTCTTTAATGATATTGATGTGTGAAATTTGGCTTGCGAGTTCTTTTTTGAAGCATAATTTTTTCCTTGGAAGGGGGAATATGGAATTCACAGACAGAAGCAACCATTGCATCTATGCTAAGGATTTTAACTACTTTTTGAACTAG

Fln Alignment:

sp_v1.1_unigene3418___RPTHVPKFGDWTIEQDTPYTTVFENARVGRGVGGKIINPNDPEENPTGFAHVVQRNNIAAQLPRKNSGPEDSIPGRSHPSPRRGTDSELNPTHVSKPHHEKRSSKEDGGIRRHVESASPGRRGLGQSPGHRYANxTKNLHTRDCGTGEHHYQSQDQSPAHHLYRGFGNKPGAEGKFSPSTTGQKSQGGNIQTNETLGRGAPLPSVGALIESSPESHDGYTYIFNKAREEKQTRGXXXXXXXXXXXXPRDISNKQESVPSQRSSSCCCFKPGAAD
D5ADF7______________RPTHVPKFGDWNTDQDVPYTSVFENARVGKGAGGKIINPNDPEENPTGFAPVVQRNNIAAQLPRKNSDPEDSIPGRSHTPPRRGNNSELNGPHVAKPRHEKRSSREDGGIRYHVESPARGRRGLGESPGHQYANxTNNLQKRESGTGEHHYQGQNQSPAHHLYQGLGNKPGAGAMFPPSTTGQKSQGGNIRANETPGKGAPLPNFGAWNESNPASADGYTYIFNKAREEKLTRGTTKIPTIPPETPPHDFGNKQANVPSRNSLFWCCFKPRATE

SNPs (tot: 43)

Position	A %	C %	G %	T %	Probability
384		16	83		0.994512
385		16	83		0.994512
386	16	83			0.994512
497		16		83	0.994512
541			80	20	0.995493
542			20	80	0.995493
544			20	80	0.995493
545	80			20	0.995493
546			20	80	0.995493
547	20	80			0.995493
550			20	80	0.995493
553		20		80	0.995493
554	20		80		0.995493
558			20	80	0.995493
562		20	80		0.995493
564	20		80		0.995493
760	25	75			0.996473
872		75	25		0.996473
873		75		25	0.996473
874		75	25		0.996473
875	25	75			0.996473
878			25	75	0.996473
880		25		75	0.996473
881	25			75	0.996473
882	25	75			0.996473
883		75	25		0.996473
884			25	75	0.996473
888	25			75	0.996473
889	75	25			0.996473
917	80			20	0.995493
918		80	20		0.995493
926		20	80		0.995493
927	20	20	60		0.99255
928	80		20		0.995493
929		20		80	0.995493
930		20		80	0.995493
931	20			80	0.995493
934			20	80	0.995493
938		20		80	0.995493
941	80	20			0.995493
942			20	80	0.995493
953		50		50	1.0
984	25			75	0.996473

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain