SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene3405

Length: 1311 nt

Origin of reads: Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v1.1_unigene3405 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	serine-threonine protein kinase, plant-type, putative	-	-	45%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	38%
Blast2go	serine-threonine protein plant-	-	-	59%

Source	GOs	Term	Type	e value	Identity
Blast2go	plasma membrane	GO:0005886	Cellular Component	0.0	59%

Source	InterPros	Term	Type	Identity
Blast2go	Protein kinase, catalytic domain	IPR000719	-	59%
Blast2go	Serine/threonine- / dual-specificity protein kinase, catalytic domain	IPR002290	-	59%
Blast2go	Serine/threonine-protein kinase, active site	IPR008271	-	59%
Blast2go	Protein kinase-like domain	IPR011009	-	59%
Blast2go	Serine/threonine-protein kinase-like domain	IPR017442	-	59%
Blast2go	Tyrosine-protein kinase, catalytic domain	IPR020635	-	59%

Full-Lengther Next Prediction

Fln status: Putative N-terminus

Fln database: coniferopsida.fasta

Fln subject: D5AAA3

Fln msg: Distance to subject end: 90 aas, W2: There is no M at the beginning, your sequence is shorter than subject: 436 - 458

Fln protein: LPLTQLIRDIHDILSDISSSPSILPKAANISPSPSTPPNAANISPSPSILPNAANISVSAGASRGRLNILGKIGIAIAVTLVSLLIFVAVLKAFKKASHDNNENDSEAGSVDILTHTAGQVANPSGNPLEVGIIDTTTHTVEEVDCLEEGIGICTYTRKELAKATDNFTTEVGKGGSASVYRANLPGNRLGAVKRVTDLDPDLFKQELSVLVRLPRHPRLVDLIGLCLQADERILVFEFISSGSLYDRLHKNKGLTSPLHWAARMDIAFQVAVALEYLHEEAKPPVLHRDVKSANVLLVDDNCAKLTDFGLSKLGPKDNQYTVTAVRGSYGYMDPQYVKTRKYSAKSDVYSFGVLLLELVTGLKAVHEDTPLAEWTETYRFSEDIERFMTIVDRNMKDQINMLELQVMIKIANLCLLDISEERSSMREIVNMIEKS

Protein Length: 437

Fln nts: CCTACCTCTTACCCAACTAATACGTGATATTCATGATATCCTCTCAGATATCTCCTCTTCCCCCTCAATTCTCCCAAAGGCTGCAAACATCTCTCCTTCCCCCTCAACTCCTCCAAACGCTGCAAACATCTCTCCTTCCCCCTCAATTCTCCCAAACGCTGCAAACATCTCTGTTTCCGCCGGGGCTTCCCGTGGCAGGCTGAACATCTTGGGCAAAATAGGAATTGCAATAGCTGTGACTCTGGTGTCGTTGCTCATTTTTGTAGCTGTGTTGAAGGCCTTCAAGAAAGCCTCCCACGACAATAATGAAAACGATTCTGAGGCGGGGAGTGTAGACATACTGACGCACACAGCGGGACAAGTTGCCAACCCTAGTGGGAACCCTTTGGAGGTGGGCATTATAGATACCACCACGCACACAGTGGAGGAAGTGGACTGTTTGGAGGAGGGCATAGGCATATGCACTTATACAAGGAAGGAACTGGCCAAGGCCACTGACAATTTTACTACTGAAGTTGGAAAGGGCGGCTCTGCATCTGTGTATCGAGCGAACTTACCAGGCAATCGACTGGGCGCCGTCAAGAGAGTAACGGATTTAGATCCCGACTTATTCAAACAAGAATTATCTGTGCTGGTCAGATTGCCACGTCATCCTCGGCTTGTTGATCTCATTGGATTGTGTTTGCAAGCAGATGAGAGAATTCTTGTGTTCGAGTTCATTTCCAGCGGGAGTTTGTATGATCGACTTCACAAGAACAAGGGTCTTACAAGTCCACTGCATTGGGCCGCTCGTATGGACATAGCGTTTCAAGTTGCTGTGGCTTTGGAATACCTTCATGAAGAAGCAAAACCTCCTGTCTTGCACCGTGATGTCAAGTCTGCAAATGTTTTGCTGGTGGATGATAACTGTGCTAAATTGACTGATTTTGGACTATCAAAGTTAGGCCCAAAAGACAACCAGTATACAGTCACTGCTGTTAGAGGTAGTTATGGTTACATGGATCCCCAATACGTGAAAACACGAAAATATTCAGCTAAAAGTGATGTGTATAGCTTTGGTGTGCTTCTGCTAGAACTAGTTACAGGTTTAAAAGCAGTACATGAAGACACACCTCTGGCAGAATGGACTGAAACATATCGTTTCAGCGAAGACATTGAAAGATTCATGACAATTGTTGATCGAAATATGAAAGATCAAATTAACATGCTGGAACTGCAGGTTATGATCAAAATTGCCAATTTATGCTTACTGGACATTAGTGAAGAGAGATCTTCGATGAGGGAGATCGTGAATATGATTGAGAAAAGTAG

Fln Alignment:

sp_v1.1_unigene3405___TYTRKELAKATDNFTTE--VGKGGSASVYRANLPGNRLGAVKRVTDLDPDLFKQELSV---LVRLPRHPRLVDLIGLCLQADERILVFEFISSGSLYDRLHKNKGLTSPLHWAARMDIAFQVAVALEYLHEEAKPPVLHRDVKSANVLLVDDNCAKLTDFGLSKLGP-KDNQYTVTAVRGSYGYMDPQYVKTRKYSAKSDVYSFGVLLLELVTGLKAVHE-----DTPLAEWTETYRFSEDIERFMTIVDRNMKDQINMLELQVMIKIANLCLLDISEERSSMREIV
D5AAA3______________TFTFRELAAATKNFRPECLLGEGGFGRVYRGRLESTGQAVAVKQLDRNGVQGNREFLVEVLMLSLLHHDNLVNLIGYCADGDQRLLVYEYMPLGSLEDHLHDLPPDKEPLDWKTRMKIAAGAAKGLEYLHDKANPPVIYRDLKCSNILLDEGYHSKLSDFGLAKLGPVGDKTHVSTRVMGTYGYCAPEYAMTGQLTIKSDVYSFGVVLLELITGRKAIDNSRSAGENNLVAWARP--LFKDRRKFSQMADPLLQCRYPMRGLYQALAVAAMCV----QEQATMRPLI

SNPs (tot: 3)

Position	A %	C %	G %	Probability
804	75	25		0.996473
969		40	60	1.0
987	25	75		0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain