SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene3398

Length: 2093 nt

Origin of reads: Biogeco_1 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene3398
ATGGGGGACTCGTGCCCTTGGCTTTCCCGAGGCTTGGACTGGAAATGTGCGAAAGAGTTCAGGATTGCAGACGGAAGGAATCGATAAATAGCAGGATTTCTGAAACGAGCGACACACCCACGAGAAGGTTTCCACTACGACGCTGATAATGAAGAGCAAAACCCCAGATTTGACAGAGGAACGGGAAGTCTGAGAAGCGGGGCTTGCAGTATGGACATACCGGGCGGCGAAGAGGAAGTGATTTCGATGCCGATATCGACCGGTCTTCCGGCCATTAGCGACTCGTCCAGGCTGAGATTGCTCGCAGCCGCAAGCACGCCGGATGGAAAACCGCCTGAAAAAGGATCAGAAGGCAGAAAAACGGTGAAATACAGAGAATGCCAGAAAAACCACGCTGCGAATCTGGGCGGACACGTGATGGACGGGTGCGGCGAATTCATGCCCAGCGGGGAGGAGGGGACGCCTGAGTCCCTCCGATGCGCTGCCTGCGAATGCCACCGCAACTTCCACAGACGGGAAGTGGAGGGCGAGGAGGCCCAAACCGCCTGCGACGTTTGCTATCACAAGAGACTCGTCTCGGGTTCGAATCTCATCCCGCTGTCGTTCCCACCGCCGCCCATGGGCGTTCTGGGGCGGGCTCTCCCTCAGATCATTGCGGCCGCACCCGTCAATAATAATAACATGAGGAGCAGCCCCGCGTTTGCGCCCTCGCCGGAGTCCGAGGAACAGGCGGACGGAAACTTGCCGTCGGGGAAGAAGCGGTTCAGAACAAAGTTCACGCACGAGCAGAAGGAGCGGATGCTGGCGTTTGCGCAGAGAGTGGGGTGGAGACTGCAGAAACACGAGGAGGCTGCCGTGCAGAGCTTCTGTCAAGAAGTTGGCGTCAGGCGACACGTTCTCAAAGTGTGGATGCACAACAATAAACACGCCATGGCCATCAAGCCCCACGCTGACAACAACAACCACAATAACGACAATACGGCCGCGGCTAATAGCAGCAGCAATAACTCAACCCCATAAAAATTTTCAGTAAGCTCTGTTATTTCGCCCCAACTTCTCACCAGAGTTTTGCTTCTTCAGGCTTCAGAATATTGGACCTGCAGGCAATAAATTTATATATTTTTTAAAGTATATATTGACATGGATGATGTCAATACTAAGATACTTGCTATTTTTTTTCCTTGTTCCAACAGATTCAGTATCTCTTTCAAAATTATTTGTATGTTTCCTTTCTGCATAAGTTATAATTCTGCTACCGGACATTGTATTCCTGTGACTCTCTTCCAATGTGTAGTCTGGGATAATGAGTTTTCACATAACCTTTAGAAATTCATGCCTGTCACTGTCACTCACTTTCAATATGGTGTCTGGATATTTCATATGGGTAGAGGATTCTGATTTCTGAGTACCATTCTACACACATTTCCAGATTTTATAGTGATGCATTCTGTTGTTTTGATTCAGAAAATCTGCAGTCCTTTTGTAATGCACGGGGTACTAGTTTTGATAATGCACGGGGTACTAGTTTTGGTTCTCAGTGAGGCGGTGATATGACCGCTTGCGATCAGAGCCAATGACCCCTTTAGTTAAATAGGATACTTACCATCAATATTTCACAAATTTTAATATTACTTCGCCTTCCCTACCCTAACCTAACCATCCCTTTCGATGGATCTCCCGCTACCTATTTGATGGATTTCTACATTTCTCTGAGTTAGTGGCTTCACGACCTGTGCAAAATCATTCGCAACGCTTTCCTTACTGTGCAAACAGATCAGATTGACAACAAATTCACGACGCAAATCCTTACTGCAAATAGGTCAGTTGCAGTTGAAACATGAAACAAACCATTTCTGAAGCAAAACCCTTTGCGGTTTTCTCTTTTGTTTGCAAGTGAGGCTTTTTATCAAGTTCTGTAATAGTTTTGTAAGGCGGTGCAGTTATTTCTTCTAAATTTTTAACATCATCTGCACCGTTCAAATAAGAATCTGTGGACTATGTTGATCTTGTTTGTAGGAATAAGGTATAACGTTATATGTTGTAATGTAAGTGTGCTATAAAATTTGAAGTGTTAAGCCTCTTCTGCCCTTAGT

Ace file of the UniGene sp_v1.1_unigene3398

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	ZF-HD homeobox protein [Flaveria bidentis]	-	-	44%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	49%
Blast2go	protein	-	-	60%

Source	InterPros	Term	Type	Identity
Blast2go	Homeodomain, ZF-HD class	IPR006455	-	60%
Blast2go	ZF-HD homeobox protein, Cys/His-rich dimerisation domain	IPR006456	-	60%
Blast2go	Homeodomain-like	IPR009057	-	60%
Blast2go	Homeodomain-related	IPR012287	-	60%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5ADH8

Fln msg:

Fln protein: MDIPGGEEEVISMPISTGLPAISDSSRLRLLAAASTPDGKPPEKGSEGRKTVKYRECQKNHAANLGGHVMDGCGEFMPSGEEGTPESLRCAACECHRNFHRREVEGEEAQTACDVCYHKRLVSGSNLIPLSFPPPPMGVLGRALPQIIAAAPVNNNNMRSSPAFAPSPESEEQADGNLPSGKKRFRTKFTHEQKERMLAFAQRVGWRLQKHEEAAVQSFCQEVGVRRHVLKVWMHNNKHAMAIKPHADNNNHNNDNTAAANSSSNNSTP*

Protein Length: 271

Fln nts: ATGGGGGACTCGTGCCCTTGGCTTTCCCGAGGCTTGGACTGGAAATGTGCGAAAGAGTTCAGGATTGCAGACGGAAGGAATCGATAAATAGCAGGATTTCTGAAACGAGCGACACACCCACGAGAAGGTTTCCACTACGACGCTGATAATGAAGAGCAAAACCCCAGATTTGACAGAGGAACGGGAAGTCTGAGAAGCGGGGCTTGCAGT_-_ATGGACATACCGGGCGGCGAAGAGGAAGTGATTTCGATGCCGATATCGACCGGTCTTCCGGCCATTAGCGACTCGTCCAGGCTGAGATTGCTCGCAGCCGCAAGCACGCCGGATGGAAAACCGCCTGAAAAAGGATCAGAAGGCAGAAAAACGGTGAAATACAGAGAATGCCAGAAAAACCACGCTGCGAATCTGGGCGGACACGTGATGGACGGGTGCGGCGAATTCATGCCCAGCGGGGAGGAGGGGACGCCTGAGTCCCTCCGATGCGCTGCCTGCGAATGCCACCGCAACTTCCACAGACGGGAAGTGGAGGGCGAGGAGGCCCAAACCGCCTGCGACGTTTGCTATCACAAGAGACTCGTCTCGGGTTCGAATCTCATCCCGCTGTCGTTCCCACCGCCGCCCATGGGCGTTCTGGGGCGGGCTCTCCCTCAGATCATTGCGGCCGCACCCGTCAATAATAATAACATGAGGAGCAGCCCCGCGTTTGCGCCCTCGCCGGAGTCCGAGGAACAGGCGGACGGAAACTTGCCGTCGGGGAAGAAGCGGTTCAGAACAAAGTTCACGCACGAGCAGAAGGAGCGGATGCTGGCGTTTGCGCAGAGAGTGGGGTGGAGACTGCAGAAACACGAGGAGGCTGCCGTGCAGAGCTTCTGTCAAGAAGTTGGCGTCAGGCGACACGTTCTCAAAGTGTGGATGCACAACAATAAACACGCCATGGCCATCAAGCCCCACGCTGACAACAACAACCACAATAACGACAATACGGCCGCGGCTAATAGCAGCAGCAATAACTCAACCCCATAA___AAATTTTCAGTAAGCTCTGTTATTTCGCCCCAACTTCTCACCAGAGTTTTGCTTCTTCAGGCTTCAGAATATTGGACCTGCAGGCAATAAATTTATATATTTTTTAAAGTATATATTGACATGGATGATGTCAATACTAAGATACTTGCTATTTTTTTTCCTTGTTCCAACAGATTCAGTATCTCTTTCAAAATTATTTGTATGTTTCCTTTCTGCATAAGTTATAATTCTGCTACCGGACATTGTATTCCTGTGACTCTCTTCCAATGTGTAGTCTGGGATAATGAGTTTTCACATAACCTTTAGAAATTCATGCCTGTCACTGTCACTCACTTTCAATATGGTGTCTGGATATTTCATATGGGTAGAGGATTCTGATTTCTGAGTACCATTCTACACACATTTCCAGATTTTATAGTGATGCATTCTGTTGTTTTGATTCAGAAAATCTGCAGTCCTTTTGTAATGCACGGGGTACTAGTTTTGATAATGCACGGGGTACTAGTTTTGGTTCTCAGTGAGGCGGTGATATGACCGCTTGCGATCAGAGCCAATGACCCCTTTAGTTAAATAGGATACTTACCATCAATATTTCACAAATTTTAATATTACTTCGCCTTCCCTACCCTAACCTAACCATCCCTTTCGATGGATCTCCCGCTACCTATTTGATGGATTTCTACATTTCTCTGAGTTAGTGGCTTCACGACCTGTGCAAAATCATTCGCAACGCTTTCCTTACTGTGCAAACAGATCAGATTGACAACAAATTCACGACGCAAATCCTTACTGCAAATAGGTCAGTTGCAGTTGAAACATGAAACAAACCATTTCTGAAGCAAAACCCTTTGCGGTTTTCTCTTTTGTTTGCAAGTGAGGCTTTTTATCAAGTTCTGTAATAGTTTTGTAAGGCGGTGCAGTTATTTCTTCTAAATTTTTAACATCATCTGCACCGTTCAAATAAGAATCTGTGGACTATGTTGATCTTGTTTGTAGGAATAAGGTATAACGTTATATGTTGTAATGTAAGTGTGCTATAAAATTTGAAGTGTTAAGCCTCTTCTGCCCTTAGT

Fln Alignment:

sp_v1.1_unigene3398___GGEEEVISMPISTGLPAISDSSRLRLLAAA---STPDGKPPEKGSEGRKTVKYRECQKNHAANLGGHVMDGCGEFMPSGEEGTPESLRCAACECHRNFHRREVEGEEAQTACDVCYHKRLVS----GSNLIPLSFP-PPPMGVLGRALPQIIAA---APVNNNNMRXXXXXXXXXXXXXXXDGNLPSGKKRFRTKFTHEQKERMLAFAQRVGWRLQKHEEAAVQSFCQEVGVRRHVLKVWMHNNKHAMAIK
D5ADH8______________GGQEEEIGMPISVSYGPIHESSKLKILTPGGNGAASDEQQQQQQAAAKKSVRYRECMKNHAASIGGHAIDGCGEFMPSGDEGTLEALKCAACNCHRNFHRREVEGE---PPCYYCYNPRKDSRKRPAGSPLPLALPSTSPPGLIARPSPQMIMAFGSGPTHENDQQEHDMALHGLHGASMA---MPIMKKRFRTKFTQEQKDKMCSFAEKLGWRIQKHDEAAVQQFCMELGVKRHVLKVWMHNNKHTLGKK

SNPs (tot: 69)

Position	A %	C %	G %	T %	Probability
34	66	33			0.997452
36			66	33	0.997452
38			33	66	0.997452
41	33		66		0.997452
42	66	33			0.997452
45			66	33	0.997452
48	66		33		0.997452
49	66	33			0.997452
57	66	33			0.997452
58	66			33	0.997452
59		33	66		0.997452
65	66		33		0.997452
273		90		10	0.90298
278	90			10	0.90298
363	83			16	0.994512
364	83		16		0.994512
365	83		16		0.994512
366		83	16		0.994512
401			80	20	0.995493
404	80	20			0.995493
407		80	20		0.995493
410	20		80		0.995493
413			80	20	0.995493
418		80	20		0.995493
420		20		80	0.995493
421		40	60		1.0
614		90		10	0.90298
615		90	10		0.90298
618		90		10	0.90298
621		90		10	0.90298
626		11	88		0.923564
627			88	11	0.923564
629	12		87		0.992554
871	11	88			0.923564
874			11	88	0.923564
889		88		11	0.923564
941	87		12		0.992554
992			80	20	0.999996
995	77		22		0.999999
997		22		77	0.999999
998	77	22			0.999999
999			77	22	0.999999
1000		77		22	0.999999
1001	77		22		0.999999
1004	77			22	0.999999
1008	77	22			0.999999
1010	87	12			0.992554
1134		14		85	0.993533
1135	85	14			0.993533
1137	85		14		0.993533
1138			14	85	0.993533
1139	85	14			0.993533
1142		14	85		0.993533
1145	85			14	0.993533
1146		14		85	0.993533
1190			16	83	0.999991
1191	16	83			0.999991
1193	83	16			0.999991
1194	83			16	0.999991
1195		83		16	0.999991
1196	83		16		0.999991
1198	83	16			0.999991
1203		16	83		0.999991
1346		75	20		1.0
1347	75		20		1.0
1455	25		75		1.0
1561		81	18		1.0
1730	13	86			0.999973
1735		86		13	0.999973

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain