SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene3396

Length: 1020 nt

Origin of reads: Biogeco_2 Uagpf Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v1.1_unigene3396 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Transcription factor, putative n=1 Tax=Ricinus communis RepID=B9RYP2_RICCO	-	-	4.0e-26	60%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	57%
Blast2go	protein	-	-	2.02695e-27	63%

Source	GOs	Term	Type	e value	Identity
Blast2go	response to water deprivation	GO:0009414	Biological Process	2.02695e-27	63%
Blast2go	stomatal movement	GO:0010118	Biological Process	2.02695e-27	63%
Blast2go	nitrate assimilation	GO:0042128	Biological Process	2.02695e-27	63%
Blast2go	response to nitrate	GO:0010167	Biological Process	2.02695e-27	63%
Blast2go	nucleus	GO:0005634	Cellular Component	2.02695e-27	63%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Phox/Bem1p	IPR000270	-	2.02695e-27	63%

Full-Lengther Next Prediction

SNPs (tot: 22)

Position	A %	C %	G %	T %	Probability
314		16	83		0.994512
317			16	83	0.994512
319	83		16		0.994512
320	83			16	0.994512
321			16	83	0.994512
322	16			83	0.994512
323		16	83		0.994512
324	16		83		0.994512
330	16			83	0.994512
331			16	83	0.994512
332	83		16		0.994512
334	83	16			0.994512
337			16	83	0.994512
352	80		20		0.995493
353		80		20	0.995493
356	20			80	0.995493
358		20		80	0.995493
359	80	20			0.995493
363			20	80	0.995493
369		60	20	20	0.99255
370	20		80		0.995493
754		71		28	1.0

SSRs (tot: 1)

Start position	End position	Sequence	Length
498	511	TCA TCA TCA TCA TC	14

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain