SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene3391

Length: 2237 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene3391
CGTCGTGACCTTGGCTGTCNNTCNTTCGATCCGACGGCGGAGGACTCGCCAATCGCATGTGTTATACTTCTTCTAACTGCAACGGGTTTTTATGCACGCTACTGCTATCGGAGAGGAAGGAGGATAACGCGTTTCAGAATTGGTACCCGAATTCTTCGAGTTCCCGTCAAATTTTTATCAAGCGGCTCTTAAACTCATCGCGCGGTCTGAGAATCGTCCCTGAGTTTTAACCGGCTTTTATTCGCGGGAATTTTGTTGAGAAATGGACAATCGATGGTGTTGAGGCGACGATATAAGCTGCGGTGATCGCGGATCCCTCTTTTACAGAATGAATTTTGATGAACATTTCGGTCCGCCTTTGTGTTCAGATTATCAATCGAAGTGTATTTGCCGGGCCAAAATTTAAGGGGATTTTTATCAGTGAAATTTGGGGTTAATTGTAGGAATCGGTGCTTGAATTGCGGTTTCAGGAGCAGGGATCCGAGCAGAGATGGAGACGGGAAATAGAGATAAACAATCGCAGGGGGCTTTTTTGTGTACGGGTTCGATATCGTGTTCGGTTTGTTTGGAGGTAGTTTCGGACAGAGGGGAGAGATCGATTGCCAAGCTCAAATGCGGTCATCATTTTCATTTAGATTGTATTGGGTCAGCATTCAATGCCAAGGGAGCAATGCAGTGCCCAAACTGCAGGCATGTAGAGCATGGTCAGTGGCTCTATGCTAATGGATGCCGTCCATATGAAGAATTCACTGTTGAGGATCTACCAAATGACGATTACCTATATGATCTGCATCATACTGAAATGCCACTTGGATTTCCATGGTGTCCATATCAAAGTTCTTTTTCCCAATTATCAGTATCTCTGGAGGACACTGAGCCTCCATCAGGTGCTTATCCTGATCTGATAGTAAATGTCTTATATGGTGAGCATCCAAGTGCTTCAAATGGGGCTCATGTATGCCCCTATCTTGCTGTTCATGGTCTTACTCGGGCAAGGCAAATGCCAATCTCTCTCAGCAATGCTGGCTCTTCCAACAGTGCAGGGGATATAGGTCCTCATCACCGAAATGCAGCGCCAGCAGTTGGCGAGGCATTTAGTTCCCATGCATTTCCTGCATCGGAAACACATCATCGTCATTGGCATTCTTCTAACACATTTCCTAGCAATAACAGTGTACCTAGTGCTGATGATCCAGCTTTACCTGCTTTGCCTTCACATGATAGATTTGGAATACCCAGGACAGAATCTGATCGTCTACACAGAACTGGATCTCCTATGCCCTCTGGTTATGGTGCCAATGGGTTTTATCCCCGTGCAGTCAATGCGAGACCTCCTCCACCAATGACTAGTGAGTTTGTTCATTCTCAAAACCATATTCATGGACATGGAGGGGGACAGATTTATCATCCACCTTCTGCTTCTTCTATACACAGTGGTTTAATAAGTCATAATCGAAGGTCAAGGTCAAGGGAGACCTTGGTTCCATCAAGAAGAGTCGTTCAAAATATCCCAGCAGAGCAAGCTCGAATGCAAGGGGCCTCGGCCTATCCAATGAGCAGGGGTCAAGAAGGAGACAACATGGGTTGGCATCAAAACAACCATTTTTATGGACTGCAGATGGAAGGATTTCCTCCAGCTCCTTGGGTTCCGCTTGATCATGATTCACAGAGGTGGGCTTGGTTTCATCGTGGACAGAACCCTCAAAATGTGCCAAGTGAACCATTAAATAGAAATTATTACCGGCACAGTTATTTTAGTGCAGAGGGAGTTGCACAGGGACGACCTGGCATTTCATTGGAAACACCTTATCAACGCCATGGTTACACAAGATTTCCCCCACCTTTTCCGTGAAATTGGAGTACATTCTGTCTTTGGCCACAAAGGATTATCAAATAAAGAGTGCTATTTCGGCATAGTATTTTATATTATTTTTAAATCTCTTTTCTACATGCTCATCTCTGTATATTTTTTTTCAGTCTGGGATCTAAATGACAGGCAATCATTTTTATATCGGTTTGCTTTGGAGGATATGACTGCACTGAGTTCAAGAGCCTGCTAATTTCCAGTACTGATTTTGTAAATTCTTGCTTAGAAAAATATTTCTTTTTGTAGAACGAGGTGCACATTGGACCCTAGATTTTATTTAATTTCATGGTTTTATTTTGATACAAGATAATTTCATTTGGTGAATTCTAAGCAATTAAATCGATACAATTACTAGTTCCTATTTGTTACC

Ace file of the UniGene sp_v1.1_unigene3391

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	transcription factor, putative / zinc finger (C3HC4 type RING finger) family protein [Arabidopsis thaliana] gb\|AAN71920.1\| unknown protein [Arabidopsis thaliana] gb\|AAY57597.1\| RING finger family protein [Arabidopsis thaliana]	-	-	8.0e-39	43%
FL-Next	tr=Predicted protein; subsp. trichocarpa).	-	-	0.0	40%
Blast2go	dna binding	-	-	0.0	55%

Source	ECs	Term	Type	e value	Identity
Blast2go	Ubiquitin--protein ligase.	EC:6.3.2.19	-	0.0	55%

Source	GOs	Term	Type	e value	Identity
Blast2go	ubiquitin-protein ligase activity	GO:0004842	Molecular Function	0.0	55%

Source	InterPros	Term	Type	Identity
Blast2go	Zinc finger, RING-type	IPR001841	-	55%
Blast2go	Zinc finger, RING/FYVE/PHD-type	IPR013083	-	55%
Blast2go	Zinc finger, C3HC4 RING-type	IPR018957	-	55%

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: tr_plants

Fln subject: B9N4J3

Fln msg: Unexpected STOP codon in 5 prime region,

Fln protein: METGNRDKQSQGAFLCTGSISCSVCLEVVSDRGERSIAKLKCGHHFHLDCIGSAFNAKGAMQCPNCRHVEHGQWLYANGCRPYEEFTVEDLPNDDYLYDLHHTEMPLGFPWCPYQSSFSQLSVSLEDTEPPSGAYPDLIVNVLYGEHPSASNGAHVCPYLAVHGLTRARQMPISLSNAGSSNSAGDIGPHHRNAAPAVGEAFSSHAFPASETHHRHWHSSNTFPSNNSVPSADDPALPALPSHDRFGIPRTESDRLHRTGSPMPSGYGANGFYPRAVNARPPPPMTSEFVHSQNHIHGHGGGQIYHPPSASSIHSGLISHNRRSRSRETLVPSRRVVQNIPAEQARMQGASAYPMSRGQEGDNMGWHQNNHFYGLQMEGFPPAPWVPLDHDSQRWAWFHRGQNPQNVPSEPLNRNYYRHSYFSAEGVAQGRPGISLETPYQRHGYTRFPPPFP*

Protein Length: 455

Fln nts: CGTCGTGACCTTGGCTGTCacTCtTTCGATCCGACGGCGGAGGACTCGCCAATCGCATGTGTTATACTTCTTCTAACTGCAACGGGTTTTTATGCACGCTACTGCTATCGGAGAGGAAGGAGGATAACGCGTTTCAGAATTGGTACCCGAATTCTTCGAGTTCCCGTCAAATTTTTATCAAGCGGCTCTTAAACTCATCGCGCGGTCTGAGAATCGTCCCTGAGTTTTAACCGGCTTTTATTCGCGGGAATTTTGTTGAGAAATGGACAATCGATGGTGTTGAGGCGACGATATAAGCTGCGGTGATCGCGGATCCCTCTTTTACAGAATGAATTTTGATGAACATTTCGGTCCGCCTTTGTGTTCAGATTATCAATCGAAGTGTATTTGCCGGGCCAAAATTTAAGGGGATTTTTATCAGTGAAATTTGGGGTTAATTGTAGGAATCGGTGCTTGAATTGCGGTTTCAGGAGCAGGGATCCGAGCAGAG_-_ATGGAGACGGGAAATAGAGATAAACAATCGCAGGGGGCTTTTTTGTGTACGGGTTCGATATCGTGTTCGGTTTGTTTGGAGGTAGTTTCGGACAGAGGGGAGAGATCGATTGCCAAGCTCAAATGCGGTCATCATTTTCATTTAGATTGTATTGGGTCAGCATTCAATGCCAAGGGAGCAATGCAGTGCCCAAACTGCAGGCATGTAGAGCATGGTCAGTGGCTCTATGCTAATGGATGCCGTCCATATGAAGAATTCACTGTTGAGGATCTACCAAATGACGATTACCTATATGATCTGCATCATACTGAAATGCCACTTGGATTTCCATGGTGTCCATATCAAAGTTCTTTTTCCCAATTATCAGTATCTCTGGAGGACACTGAGCCTCCATCAGGTGCTTATCCTGATCTGATAGTAAATGTCTTATATGGTGAGCATCCAAGTGCTTCAAATGGGGCTCATGTATGCCCCTATCTTGCTGTTCATGGTCTTACTCGGGCAAGGCAAATGCCAATCTCTCTCAGCAATGCTGGCTCTTCCAACAGTGCAGGGGATATAGGTCCTCATCACCGAAATGCAGCGCCAGCAGTTGGCGAGGCATTTAGTTCCCATGCATTTCCTGCATCGGAAACACATCATCGTCATTGGCATTCTTCTAACACATTTCCTAGCAATAACAGTGTACCTAGTGCTGATGATCCAGCTTTACCTGCTTTGCCTTCACATGATAGATTTGGAATACCCAGGACAGAATCTGATCGTCTACACAGAACTGGATCTCCTATGCCCTCTGGTTATGGTGCCAATGGGTTTTATCCCCGTGCAGTCAATGCGAGACCTCCTCCACCAATGACTAGTGAGTTTGTTCATTCTCAAAACCATATTCATGGACATGGAGGGGGACAGATTTATCATCCACCTTCTGCTTCTTCTATACACAGTGGTTTAATAAGTCATAATCGAAGGTCAAGGTCAAGGGAGACCTTGGTTCCATCAAGAAGAGTCGTTCAAAATATCCCAGCAGAGCAAGCTCGAATGCAAGGGGCCTCGGCCTATCCAATGAGCAGGGGTCAAGAAGGAGACAACATGGGTTGGCATCAAAACAACCATTTTTATGGACTGCAGATGGAAGGATTTCCTCCAGCTCCTTGGGTTCCGCTTGATCATGATTCACAGAGGTGGGCTTGGTTTCATCGTGGACAGAACCCTCAAAATGTGCCAAGTGAACCATTAAATAGAAATTATTACCGGCACAGTTATTTTAGTGCAGAGGGAGTTGCACAGGGACGACCTGGCATTTCATTGGAAACACCTTATCAACGCCATGGTTACACAAGATTTCCCCCACCTTTTCCGTGAAATTGGAGTACATTCTGTCTTTGGCCACAAAGGATTATCAAATAAAGAGTGCTATTTCGGCATAGTATTTTATATTATTTTTAAATCTCTTTTCTACATGCTCATCTCTGTATATTTTTTTTCAGTCTGGGATCTAAATGACAGGCAATCATTTTTATATCGGTTTGCTTTGGAGGATATGACTGCACTGAGTTCAAGAGCCTGCTAATTTCCAGTACTGATTTTGTAAATTCTTGCTTAGAAAAATATTTCTTTTTGTAGAACGAGGTGCACATTGGACCCTAGATTTTATTTAATTTCATGGTTTTATTTTGATACAAGATAATTTCATTTGGTGAATTCTAAGCAATTAAATCGATACAATTACTAGTTCCTATTTGTTACC

Fln Alignment:

sp_v1.1_unigene3391___GSISCSVCLEVVSDRGERSIAKLKCGHHFHLDCIGSAFNAKGAMQCPNCRHVEHGQWLYANGCRPYEEFTVEDLPNDDYLYDLHHTEMPLGFPWCPYQSSFSQLSVSLEDTEPPSGAYPDLIVNVLYGEHPSA-SNGAHVCPYLAVHGLTRARQMPISLXXXXXXXXXXDIGPHHRNAAPAVGEAFSSHAFPASETHHRHW--HSSNTFPSNNSVXXXXXXXXXXXXXHDRFGIPRTESDRLHRTGS---PMPSGYGANGFYPRAVNARPPPPMTSEFVHSQNXXXXXXXXXXXXPPSAS-SIHSGLISHNRRSRSRETL
B9N4J3______________GSVSCSICLEVVTDNGDRSWAKLQCGHQFHLDCIGSAFNVKGAMQCPNCRKIEKGQWLYANGCRSLPEFTMDDWAHDEDLYDLSYSEMSFGVHWCPF-GSLARLPSSFEEGEFPSNAYHDLLGHAIFAEHTAAVSSATHQCPYIAYFGPIHPSSSNASVSVSDGSSFN-----NHWNGPSVPSEIPSSYAFPAMDIHYHSWEHHSPPFSTTGNRIGNADQPSVPPVTQRS----ARTSSDLPPRSGSLMHPFLVGHSSSARAGSSVASSMIPPYQGSNARARDRVQALQAYYQQQQPGNSPPIHTPVVSGSRRSSSHRGL

SNPs (tot: 32)

Position	A %	C %	G %	T %	Probability
21	33	66			0.997452
22	33	66			1.0
25	33			66	1.0
113	85			14	0.993533
114		14	85		0.993533
115	85		14		0.993533
148		87		12	0.992554
151	87			12	0.992554
152	87		12		0.992554
153	12			87	0.992554
154		12		87	0.992554
158		87	12		0.992554
160	87			12	0.992554
163	12			87	0.992554
166	12	87			0.992554
296	88		11		0.923564
308		11		88	0.923564
497	25		75		0.996473
503	75			25	0.996473
504	75	25			0.996473
505	75		25		0.996473
506		25		75	0.996473
509	75			25	0.996473
512			25	75	0.996473
513	75			25	0.996473
514	75		25		0.996473
518	75		25		0.996473
519			25	75	0.996473
526	33		66		0.997452
830	90			9	0.999842
835	90			9	0.999842
1069	87			12	0.992554

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain