SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene3383

Length: 1790 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v1.1_unigene3383 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	kinase, putative (EC:2.7.11.13)	-	-	78%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	34%
Blast2go	protein	-	-	82%

Source	GOs	Term	Type	e value	Identity
Blast2go	protein kinase activity	GO:0004672	Molecular Function	0.0	82%

Source	InterPros	Term	Type	Identity
Blast2go	Protein kinase, catalytic domain	IPR000719	-	82%
Blast2go	AGC-kinase, C-terminal	IPR000961	-	82%
Blast2go	Serine/threonine- / dual-specificity protein kinase, catalytic domain	IPR002290	-	82%
Blast2go	Serine/threonine-protein kinase, active site	IPR008271	-	82%
Blast2go	Protein kinase-like domain	IPR011009	-	82%
Blast2go	Serine/threonine-protein kinase-like domain	IPR017442	-	82%
Blast2go	Tyrosine-protein kinase, catalytic domain	IPR020635	-	82%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NPF9

Fln msg:

Fln protein: VVTLAVTHVVTLAVTHFFYSFTCRDNLYLVMEYLNGGDLYSLLRNLGCLDEDMARVYIAEVVLALEYLHSLHVVHRDLKPDNLLIAHDGHIKLTDFGLSKVGLINSTDDLSGPAVSGTMLLGEDEDSLCATEQSDQRERRQKRSAVGTPDYLAPEILLGTGHAETADWWSVGVILFELLTGIPPFNAEHPQTIFDNILNRKIPWPAVPEEMSYEAMDLIDKLLTEDPNQRLGAKGAAEVKRHPYFKDINWDTLQRQKAAFVPASDGALDTSYFTSRYMWNSSEGNAYSANNFEDISDCDSSSGSSCSFINGPDEVIDEGLAKFDNTPSVNYSFSNFSFKNLSQLASINYDLLTISGKDSPKGSDSHSSIA*

Protein Length: 372

Fln nts: CGTCGTGACCTTGGCTGTCACTCACGTCGTGACCTTGGCTGTCACTCATTTTTTCTATTCATTTACATGTAGAGATAACCTGTATCTTGTAATGGAGTACTTAAATGGAGGCGATCTTTACTCATTGCTGAGAAATTTAGGCTGCTTGGATGAAGACATGGCACGTGTTTATATAGCTGAAGTTGTTCTTGCGTTGGAGTACTTGCATTCATTACATGTAGTGCACAGAGATCTGAAGCCAGACAACTTGCTGATTGCCCACGATGGCCATATTAAGCTGACAGATTTTGGACTCTCAAAAGTTGGTCTTATAAACAGCACTGATGATTTGTCTGGACCAGCAGTGAGTGGTACAATGCTTCTGGGAGAAGATGAAGATTCCTTATGTGCAACTGAGCAGTCTGACCAAAGAGAAAGACGTCAAAAGCGCTCAGCTGTTGGAACCCCGGATTACTTGGCGCCAGAGATTCTTTTGGGAACTGGGCATGCTGAAACTGCAGATTGGTGGTCAGTTGGTGTCATTCTTTTTGAACTGCTCACAGGCATTCCACCTTTTAATGCAGAACATCCACAGACTATATTTGATAATATTCTGAATCGCAAAATTCCCTGGCCTGCTGTCCCTGAGGAGATGTCATATGAAGCAATGGACTTAATTGATAAGCTTCTTACTGAGGATCCCAACCAGAGACTTGGGGCTAAAGGAGCAGCAGAGGTGAAGAGACACCCATATTTCAAGGACATTAATTGGGACACGCTACAAAGGCAGAAGGCAGCTTTCGTTCCAGCCTCAGATGGAGCTTTGGATACAAGTTATTTCACTTCTCGATACATGTGGAATTCATCGGAAGGAAATGCTTATTCAGCTAACAATTTTGAAGACATTAGCGATTGTGACAGCAGCAGTGGGAGCAGTTGTTCTTTCATCAATGGCCCTGATGAAGTGATAGATGAAGGCTTGGCAAAGTTTGATAATACACCATCTGTGAATTACTCCTTCAGCAATTTCTCATTCAAGAACTTGTCACAACTGGCATCCATCAACTATGATTTGCTGACAATAAGTGGGAAGGATTCTCCGAAAGGTTCTGATTCTCATTCCTCAATTGCTTGA___ACGTTTACCATCTGGTAAACTGAAGGAGGTCATTTGCAAGTCGTCAGAACCTGTGGTTACTCGATGTACAATATGTAAATATTTGTTCCATGAATGAGAGCATCAGTAGTAAGAAGTCACGGAGCCATAGAATTGCCCTATGATGCGAACTGCACGATCATGCATGAGGAAGTTGGCCTAGGCACAGCTATATTGGAGTTGTATATTTGTTGCGAATCAATCAAAGCATTTTTACACTATTTTATGTGCCATGTAATGGTTTTGTAAATTTGAGGTCATTTGAAAACTATACCGAGTGTCTTTTTTCTTGCTTCTATGATCAGGCAAAAACTGATCAATCTGGCCACGATGTCCTGGCATGCCAAGTGGCATTCATGTGTAGACTAACTTGTTTTAGTACGTCTGTATACATTACATGCCTGTTCTACTGTTGGGAACTTTTTGTTGCTTCGAGTTGTGTGCATGGAAATATTATTCAAGCCAAAATCAAAATGACTTGTGGCTGAAGATGGCAACATTTTATCTTATGCAATGCATAAGAAGAGAGTTTGAATTAAAAGGAAAACCATTATGAATTGCTGAGGTCACTGAGTTTGAATTAAAGGGAAAACCATTATGAATTGCTGAGGTCACTGAGTTTGAATTAAAAGGAAAACCATTATGAATTGCTGAGGCC

Fln Alignment:

sp_v1.1_unigene3383___FYSFTCRDNLYLVMEYLNGGDLYSLLRNLGC--LDEDMARVYIAEVVLALEYLHSLHVVHRDLKPDNLLIAHDGHIKLTDFGLSKV---------------------------------GLINSTDDLSGPAVSGTMLLGE-DEDSLCATEQSDQRERRQKRSAVGTPDYLAPEILLGTGHAETADWWSVGVILFELLTGIPPFNAEHPQTIFDNILNRKIPWPAVPEEMSYEAMDLIDKLLTEDPNQRLG-AKGAAEVKRHPYFKDINWDTLQR-QKAAFVP
A9NPF9______________FTKFESKNHSFLLMSYCSGGDLNTLRQRQKDRKFSESAARFYAAEVVLALEYLHQHGILYRDLKPENILLQADGHIMITDFDLSLMINNSQESRAKDSYRDQNGSCKKKTKSFLAKLNPGHVGAKDCMNASAMITTKQDDSAKETSFCHLDGRKESVYEQAHSFVGTEEYVAPEILWGKGHGIAVDWWAFGVLLYEMVYGKTPFKGCNRKETFYNILCKE---PPQLSEHSSPLKDLLRRLLVKEPTLRLGFNSGAQEIKNHEFFEGVRWDELEYVSRPPFVP

SNPs (tot: 31)

Position	A %	C %	G %	T %	Probability
1183	80		20		0.995493
1269	75		25		0.996473
1271	75		25		0.996473
1334		20		80	0.995493
1397	11		88		0.923564
1423		10		90	0.90298
1425	10			90	0.90298
1461	88			11	0.923564
1603	10		90		0.90298
1713		87		12	0.999964
1714	87		12		0.999964
1715	12		87		0.999964
1718			12	87	0.999964
1720		12		87	0.999964
1721	12	87			0.999964
1722			12	87	0.999964
1724		12		87	0.999964
1728			12	87	0.999964
1732	87	12			0.999964
1734		12		87	0.999964
1737	87	12			0.999964
1738			12	87	0.999964
1747		33		66	1.0
1749	66	33			1.0
1750	33		66		1.0
1751		33		66	1.0
1752		33	66		1.0
1758	20	80			0.995493
1765		80		20	0.995493
1766	80		20		0.995493
1772			80	20	0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain