SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene3382

Length: 1726 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v1.1_unigene3382 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Pectinesterase n=1 Tax=Ricinus communis RepID=B9RKG6_RICCO	-	-	76%
FL-Next	sp=Pectinesterase; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	53%
Blast2go	pectin methylesterase	-	-	84%

Source	GOs	Term	Type	e value	Identity
Blast2go	cytoplasm	GO:0005737	Cellular Component	0.0	84%
Blast2go	cell wall	GO:0005618	Cellular Component	0.0	84%

Source	InterPros	Term	Type	Identity
Blast2go	Pectinesterase, catalytic	IPR000070	-	84%
Blast2go	Pectin lyase fold/virulence factor	IPR011050	-	84%
Blast2go	Pectin lyase fold	IPR012334	-	84%
Blast2go	Pectinesterase, active site	IPR018040	-	84%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9P2L6

Fln msg: your sequence is shorter than subject: 289 - 357

Fln protein: FNCVKQAVDSLPLINIVRVIIKVNPGVYTEKIEIPATTAFVTVEGSGADNTIIQWGDTADTKGPRGLPIGTKFSATFAVDSPYFIAKNITFKNTAPIPPPGAVGKQAVAFRISGDTAAFWGCRFLGAQDTLYDDQGRHYFKDCYIEGSVDFIFGDALSMYEGCHVHAIASGAGAVTAQKRGSLLEDTGFSFVRCKVTGSGALYLGRAWGTFSRVVYAYTYMDNIIVPKGWYNWGDPSRELTVFYGQYKCTGPGADYSNRVSWSRELTDEEAKPFIDLSYIDGDEWIKL*

Protein Length: 290

Fln nts: TTCAATTGTGTGAAGCAGGCCGTGGATTCATTGCCTCTTATCAATATCGTTCGTGTCATAATTAAGGTCAATCCTGGGGTGTACACGGAGAAAATTGAAATACCTGCAACCACGGCATTCGTAACTGTGGAGGGAAGTGGTGCAGACAACACTATAATACAATGGGGAGATACCGCTGATACTAAAGGACCAAGAGGCCTTCCCATTGGCACTAAATTCTCTGCAACTTTTGCAGTTGATTCTCCATACTTCATTGCCAAAAACATCACCTTCAAGAACACAGCTCCGATACCTCCACCGGGAGCAGTAGGAAAGCAGGCTGTTGCCTTCAGAATATCAGGAGACACTGCTGCGTTTTGGGGTTGTAGGTTTCTGGGAGCACAGGATACCCTTTACGACGATCAAGGCCGACATTATTTCAAGGACTGCTATATTGAAGGATCAGTTGATTTTATTTTTGGAGATGCTCTGTCCATGTATGAGGGATGTCATGTGCATGCAATAGCAAGTGGGGCTGGAGCTGTAACAGCCCAAAAGCGAGGGAGCTTGTTAGAGGATACCGGATTCTCCTTTGTAAGATGCAAAGTGACTGGTTCAGGAGCCTTATATCTTGGACGAGCGTGGGGAACATTCTCTCGTGTTGTGTATGCTTATACTTACATGGACAATATCATCGTGCCCAAGGGCTGGTACAACTGGGGTGATCCCTCCAGAGAACTGACTGTCTTCTATGGGCAGTACAAGTGCACTGGACCAGGGGCAGATTATTCAAACAGAGTTTCATGGTCTCGCGAGTTGACAGATGAAGAAGCCAAGCCCTTTATTGATCTCAGCTACATTGATGGGGACGAATGGATCAAACTGTGA___AGATTGATCAGTTCATAGAAAAGTGTGCTGGTGATATTGTACTATTATGCTGACAATTTCTTGTGAAGGACCAAACCTTTTGTTAGACCCCAAACTTGAACTATTATGCATACAGATTCAATACCAATACTCGTATTCAGTGACCTTTCCTTTAAGTTCTAAGACCTCTTTGAGCTATGCTTAGGCCGCCACAGGGCCAACCCTGAGCTATGGTCAGTCACACCTCCAACCTCTTGGAGAAATCAGATAAGACTGGCCCAAGACCACCCTTTAGCTATGCTCATGTAATATTCAGTGCAGGACCTTACCTTCCTCAGTGAAGTAAGTGGCGACTTTTACTTGAGCTTTGCATAAGACCTGGAACGAGCTCAGTCATGAAAGGTCATAGTCTTACCTGAGCTCTGGATTGGATTTAAGACCAAGCTTCCATGCATTTGGAGTGACAAGTCACATGCTTTCAGTGTCAGGTACTATAGGAGAAATGGATTTTTTCCACAGTACCTCAAATTTCTGAAACTGTAAGTGGGGTCAGAAGGATGCGATACGATAGGATACGAGGTATATGAGAGTTTTTTTAGTCATAGAAACATTTTCTAGATGCCATTCATTCTTTGCTGTATCCTACTTTTTTAATTGTCCAGCACCTCTTATACACTTGGAGCTAGAGGTGAACTTGAAGAAATTGCCTATACCGATTTGTTTGTTTGTTTAAATTGATTAGAAATCTAGTAATCCAATCACCTCAAGCTAGTTGGAGGTGAACTTAAGCTAGTTGGAGGTGAACTTGTGAGAGTTGTAAGTGCCAATTTGTTTATTCACTTATATTGAGAAAATATCTTATTTATCCAATCACCTAATG

Fln Alignment:

sp_v1.1_unigene3382___FNCVKQAVDSLPLINIVRVIIKVNPGVYTEKIEIPATTAFVTVEGSGADNTIIQWGDTADTKGPRGLPIGTKFSATFAVDSPYFIAKNITFKNTAPIPPPGAVGKQAVAFRISGDTAAFWGCRFLGAQDTLYDDQGRHYFKDCYIEGSVDFIFGDALSMYEGCHVHAIASGAGAVTAQKRGSLLEDTGFSFVRCKVTGSGALYLGRAWGTFSRVVYAYTYMDNIIVPKGWYNWG-DPSRELTVFYGQYKCTGPGADYSNRVSWSRELTDEEAKPFIDLSYIDGDEWIK
A9P2L6______________FLTVQAAVDSVIEGNREIVIINIHAGYYLEKVLVPATKPYITFQGAGKEFTVIEWHNRASDLDPTGQQLRTYHSASVTVLANYFSAKNISFKNTAPAPMPGMEGWQAVAFRISGDKAYFLGCGFYGAQDTLCDDEGRHYFKECYIEGSIDFIFGNGRSMYKHCELHSIAKEFGSIAAQGREKPYEKTGFAFVHCTVTGTGPLYIGRAMGQYSRIVYAYTYFDDIVAREGWDDWGHQTTKDRTAFFGVYKCYGPGAAAAGGVSWVHELTPEEARPFLVKSYVNGKHWIQ

SSRs (tot: 1)

Start position	End position	Sequence	Length
150	164	AAAC AAAC AAAC AAA	15

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain