SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene3372

Length: 1650 nt

Origin of reads: Biogeco_1 Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene3372

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Electron carrier, putative n=1 Tax=Ricinus communis RepID=B9S1S3_RICCO	-	-	64%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	55%
Blast2go	protein	-	-	71%

Source	ECs	Term	Type	e value	Identity
Blast2go		EC:1.1.3.2-	-	0.0	71%

Source	GOs	Term	Type	e value	Identity
Blast2go	long-chain-alcohol oxidase activity	GO:0046577	Molecular Function	0.0	71%
Blast2go	microsome	GO:0005792	Cellular Component	0.0	71%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Glucose-methanol-choline oxidoreductase, N-terminal	IPR000172	-	0.0	71%
Blast2go	Glucose-methanol-choline oxidoreductase, C-terminal	IPR007867	-	0.0	71%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LQ84

Fln msg: your sequence is shorter than subject: 516 - 743

Fln protein: SKSDGRKKAITIKCDVTVVGSGTGGGVVAGVLAKAGYKVLVLEKGKYFAKNKLSLLEGPSLDQMYEGGGLLATDDLGVVLLAGSTVGGGSSVNWSASIRTPEHVIREWSEKLKLKQFATRQYTEAMDIVCRRMGVQEEICSEGFMNKVLRKGCQELGYPVNNIPRNAGSDHFCGWCCFGCKDGQKQGTNETWLVDAVSSNAVILSGCKAIGVVQEEKRTDGKRRKRAVGVVFQAGNVSQNIYVESKVTVAACGALFSPSLLRKSGLKNPNIGKNLHLHPVQMAWGYFPESEWPQGKSYEGGIMTSMSPVFDPSGYGTIIQTPSLHPGLFSVLMPWTSALDMKERMSRFARTAHIFALARDKGSGTVNLPGNLSYSLNPYDENNLKKGIEKVLRIMIAAGAEEVGTHHCSGERLKPKTSSPHEVENFIKRASSRSLRDLSTPLCSAHQMGSCRMGIDKGHSVVNPRGETWEVEGLFVADASVLPTALGVNPMVTVQSVAYCIANFILEDLKTREVN*

Protein Length: 517

Fln nts: AAAGTAAAAGTGATGGCAGAAAGAAGGCAATCACAATAAAATGCGATGTAACTGTAGTAGGTTCAGGCACTGGAGGGGGAGTAGTTGCAGGGGTCCTTGCAAAGGCTGGCTACAAAGTTTTAGTTCTTGAAAAAGGAAAGTACTTTGCCAAGAATAAATTGTCCCTACTGGAGGGTCCATCGTTGGATCAGATGTACGAGGGAGGAGGTCTTTTAGCTACGGATGACCTTGGGGTTGTCCTCCTGGCGGGCTCAACAGTGGGTGGAGGGTCCTCTGTGAATTGGTCTGCTTCAATTCGCACTCCTGAACACGTCATAAGAGAGTGGAGTGAAAAGCTCAAATTAAAACAATTTGCTACTAGGCAATACACAGAAGCCATGGATATCGTCTGCAGGAGAATGGGAGTGCAGGAGGAAATCTGCAGTGAGGGTTTCATGAACAAGGTTCTCAGAAAAGGTTGCCAAGAATTGGGGTATCCTGTCAATAACATACCTCGAAATGCTGGTTCTGATCATTTCTGTGGATGGTGTTGCTTTGGATGCAAAGATGGTCAGAAACAAGGCACAAACGAGACATGGCTAGTGGATGCAGTCTCTTCAAATGCTGTAATTCTTTCAGGATGCAAAGCCATAGGGGTAGTACAAGAAGAGAAAAGGACTGATGGGAAAAGGAGGAAAAGAGCAGTGGGAGTTGTTTTCCAGGCAGGGAATGTGTCTCAAAATATTTATGTGGAGTCTAAAGTAACTGTTGCCGCATGTGGGGCACTCTTCAGCCCTAGTTTGTTGAGGAAAAGTGGGCTTAAGAACCCTAATATTGGGAAAAATCTTCATCTGCATCCTGTTCAGATGGCTTGGGGCTATTTTCCTGAATCAGAATGGCCACAGGGTAAGAGCTATGAAGGGGGGATAATGACTTCAATGTCTCCTGTTTTTGACCCCTCTGGTTATGGAACCATAATTCAAACGCCTTCATTGCATCCAGGTCTGTTTTCTGTTCTGATGCCATGGACTTCTGCCTTAGATATGAAGGAAAGAATGTCCAGGTTTGCTAGAACAGCTCATATATTTGCCTTGGCCAGGGATAAGGGCTCGGGAACCGTGAACCTCCCTGGGAATCTCAGTTACAGTTTAAACCCATATGACGAAAATAATCTTAAGAAAGGAATAGAGAAAGTGTTGAGAATAATGATTGCAGCTGGAGCAGAGGAAGTTGGTACCCACCATTGCTCTGGCGAGCGTCTGAAGCCGAAAACATCCAGTCCCCATGAGGTTGAGAATTTTATAAAGCGTGCAAGCTCAAGGAGCCTGAGAGATTTATCAACTCCTTTGTGTTCTGCTCATCAGATGGGTAGTTGTAGAATGGGCATTGATAAAGGCCATTCAGTGGTTAATCCCAGAGGGGAGACGTGGGAAGTGGAAGGATTGTTTGTGGCTGATGCTAGTGTCTTGCCTACTGCTCTTGGTGTCAATCCCATGGTCACTGTTCAGTCTGTAGCTTATTGCATTGCCAATTTCATTTTGGAAGATCTCAAGACTAGAGAGGTCAATTAG___TTGACTTGAGTGTGGAGTCATTGCCATGGTCAATGTTCAGTCTAGCTTATTGCACTGCCAATTTCATTTTGGAATCTCTCAAGACTAGAGAAGACAATTA

Fln Alignment:

sp_v1.1_unigene3372___GRKKAITIKCDXXXXXXXXXXXXXXXXXXXXXXXXLVLEKGKYFAKNKLSLLEGPSLDQMYEGGGLLATDDLGVVLLAGSTVGGGSSVNWSASIRTPEHVIREWSEKLKLKQFATRQYTEAMDIVCRRMGVQEEICSEGFMNKVLRKGCQELGYPVNNIPRNAGSDHFCGWCCFGCKDGQKQGTNETWLVDAVSSNAVILSGCKAIGVVQEEKRTDGKRRKRAVGVVFQAGNVSQNIYVESKVTVAACGALFSPSLLRKSGLKNPNIGKNLHLHPVQMAWGYFPESEWPQGKSYEGGIMTSM---SPVFDPSGYGTIIQTPSLHPGLFSVLMPWTSALDMKERMSRFARTAHIFALARDKGSGTVNLPGNLSYSLNPYDENNLKKGIEKVLRIMIAAGAEEVGTHHCSGERLKPKTSSPHEVENFIKRASSRSLRDLSTPLCSAHQMGSCRMGIDKGHSVVNPRGETWEVEGLFVADASVLPTALGVNPMVTVQSVAYCIANFILEDLKT
B8LQ84______________GKEKAWKVECDAVVVGSGSGGGVAAGVLAKAGYRVIVLEKGKYYARDDLTLLEGPSFDQMYESGGILPTNDGKVLVMAGATVGGGSAINWSASIRTPPHVLKEWSKQHGLPLFESHDYQDAMNAVCGRLGVQDGCSKESFQNSVLSTGCAKLGFRFEKVPRNSTEDHFCGSCCFGCRKGNKKGADETWLVDAMNSGSLILAGCKAEKVLCQE--IPGSWKQRAAGVVAAFGPKRRSIFVQAKVTVAACGSLLTPLLLRSSGLRNPNIGRNLHLHPVQMAWGFFPENKEPAGKPHEGGIITTICKEGAKWEQSGYGTIIQTPAIAPGSFASMIPWTSGLDMKERMQKYHRTAHVFCLARDRGSGSVGGEKDLDYRFAESDKDNLKEGLRRCVQILIAAGATEVGTHRSDGERLAVKGATDDEIEEFLNN-KGKGRRGVWPTFFSAHQMGSCRMGKDEESGGVDWKGESWEVEGLFVCDGSLLPTSVGVNPMITIQSLAFCVANYILQFLRT

SNPs (tot: 8)

Position	A %	C %	G %	T %	Probability
1126	66		33		0.997452
1144	75		25		0.996473
1145		75	25		0.996473
1169	80		20		0.995493
1268		20		80	0.995493
1436			16	83	0.994512
1438	83		16		0.994512
1570	33		66		0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain