SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene3365

Length: 1508 nt

Origin of reads: Biogeco_1 Uagpf Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v1.1_unigene3365 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	ATP binding protein, putative n=1 Tax=Ricinus communis RepID=B9RIQ4_RICCO	-	-	77%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	86%
Blast2go	atp binding	-	-	85%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: C0PRP9

Fln msg: your sequence is longer than subject: 312 - 165

Fln protein: MLPLRRPDLFKGGLLKPCKGILLFGPPGTGKTMLAKALATEAGASFINVSMSTITSKWFGEDEKNVRALFSLAAKVSPTVIFIDEVDSMLGQRSRVGEHEAMRKIKNEFMAHWDGLLSRNGERVLVLAATNRPFDLDEAIIRRFERRIMVGLPSVENREKILMTLLAKEKLEGGFDFKELAAMTEGYSGSDLKNLCTTAAFQPVRELIRREQEKLKAGEKENFEKKAEESKSGPFNKADTSTNNGADKNEKEEAAEPIVLRPLTMEDMRQAKNQVSASFASEGTIMNELQQWNDLYGEGGSRKKQQLSYFM*

Protein Length: 313

Fln nts: ATGGGATTGGTGTGAATTTTTCAGATATTGGAGCCTTGGACAATGTCAAAGAAGCGCTTCAAGAGCTTGTA_-_ATGTTGCCTCTTCGACGTCCAGACCTTTTCAAAGGCGGGCTTCTTAAGCCTTGCAAAGGCATCTTGCTGTTTGGTCCCCCAGGAACTGGGAAAACAATGCTTGCAAAGGCTCTCGCAACTGAGGCTGGTGCCAGTTTCATTAATGTTTCAATGTCCACCATTACGTCGAAGTGGTTTGGAGAAGATGAAAAAAATGTGAGAGCATTGTTTAGTTTGGCTGCAAAAGTGTCCCCAACTGTGATCTTCATTGATGAGGTAGACAGCATGCTGGGGCAACGGTCTAGGGTTGGAGAGCATGAGGCAATGAGAAAAATCAAGAATGAGTTTATGGCCCACTGGGATGGATTGCTGTCTAGGAATGGAGAGCGCGTTCTTGTGTTGGCTGCAACAAATAGACCTTTCGATCTTGATGAAGCTATCATCAGACGTTTTGAGCGAAGGATCATGGTAGGTCTACCTTCTGTTGAGAATAGAGAAAAAATTCTCATGACACTCCTTGCAAAAGAGAAACTTGAAGGTGGTTTTGACTTCAAGGAGCTTGCAGCCATGACTGAAGGATACAGTGGCAGTGACTTGAAGAACTTATGCACAACAGCAGCTTTCCAGCCTGTAAGAGAGTTAATAAGGAGAGAGCAAGAGAAACTAAAGGCCGGTGAAAAGGAGAATTTCGAGAAAAAGGCAGAAGAAAGTAAGTCAGGGCCCTTCAATAAGGCTGATACATCAACAAATAATGGTGCAGACAAAAATGAAAAAGAAGAGGCTGCTGAACCTATTGTCCTAAGGCCTCTGACCATGGAAGACATGAGGCAGGCAAAGAATCAGGTATCAGCAAGCTTTGCATCCGAGGGCACAATAATGAATGAGCTGCAGCAATGGAATGACTTGTATGGTGAAGGTGGTTCCAGAAAAAAGCAACAGCTATCATATTTTATGTAA___GCTACTGGTTGGTTATGCCGAACTAATTCGAGTAAGAACTCTTCAGTAAACTAGTATGCTCTTGGGAGGTTCCTTCATAGTGCACATCATACTGCAGCATGAGTATTACCTATATCTGATCTTCCCAGCTTTCCAAATATTCTGCTGTTCAAAACAGAACTGTATAAAGAATCCCTTGCTAAGCCAGAGCACACGATTTGTGTCATCACTGGCTACTTTGGAAGTGGTGAATATTCCCACCAGGTGGTTAGCTCTTTGAGGTCCTTTTTAGTCTATCACTCTACAGTGAAATATGATTGCTCATTTGATGTGTTGTGTTATATTGCCTCCTCTCATTTGGTAGAACATCAGTAGGTTTTTCCAAAATATGGATCGTGCATTACATTGTATGCTTGCATGCATATTTGTGTTATGGATTATCTGTTCTCATTGGACCATAACATTGTGTCAGACTGTTAACATAGTGTCACTGTAAGGGGAAAGCTTGATGATATGTCTTTT

Fln Alignment:

sp_v1.1_unigene3365___MVGLPSVENREKILMTLLAKEKLEGGFDFKELAAMTEGYSGSDLKNLCTTAAFQPVRELIRREQEKLKAGEKENFEKKAEESKSGPFNKADTSTNNGADKNE--KEEAAEPIVLRPLTMEDMRQAKNQVSASFASEGTIMNELQQWNDLYGEGGSRKKQQLSYFM
C0PRP9______________MIGLPSVENREKILVTLLAKENLEEGFDFKEIATITEGYTGSDLKNLCTTAAFHPVRELIRREQEKVKAGKKENAEKKTEESKSGPLDKADTSTDNATDKKEKVKEEAAEPIVLRPLTNEDMRQAKDQVSASFASEGTIMNELQQWNDLYGEGGSRKKQQLSYFM

SNPs (tot: 13)

Position	A %	C %	G %	T %	Probability
624	10			90	0.90298
625		10		90	0.90298
626			10	90	0.90298
627	10		90		0.90298
629		88	11		0.923564
819	66	33			0.997452
820	66	33			0.997452
1065	75		25		0.996473
1246		16		83	0.994512
1359		20		80	0.995493
1360		20	80		0.995493
1361	20		80		0.995493
1362			80	20	0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain