SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene3364

Length: 1608 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v1.1_unigene3364 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	carbon-nitrogen hydrolase family protein [Arabidopsis thaliana] gb\|AAL91613.1\| AT5g12040/F14F18_210 [Arabidopsis thaliana] gb\|AAM10335.1\| AT5g12040/F14F18_210 [Arabidopsis thaliana]	-	-	73%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	91%
Blast2go	carbon-nitrogen hydrolase family protein	-	-	86%

Source	GOs	Term	Type	e value	Identity
Blast2go	zinc ion binding	GO:0008270	Molecular Function	0.0	86%
Blast2go	chloroplast	GO:0009507	Cellular Component	0.0	86%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Nitrilase/cyanide hydratase	IPR003010	-	0.0	86%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NNV1

Fln msg: your sequence is longer than subject: 389 - 358

Fln protein: MDGLSLANRINLKYATEADHLVSIGDGSKRMTSLLSYSLRVVVSAFPSKSSIASTVGHLSATPKRFLGNRLKFSYRNYISAMAKPEEARIPPAVAPPSVPNGGKFKIALCQLSVTENKERNIAHARAAVEAAADNGAQLVVLPEIWNGPYSNASFPVYAEDIDAGGSASPSTSMLSEVARSKGITIVGGSISERSGDHLYNTCCVFGKDGELKAKHRKIHLFDIDIPGKISFMESKTLTAGNTPTIVDTDVGRIGIGICYDIRFQELAMLYAARGAHLICYPGAFNMTTGPLHWELLQRARAVDNQLYVASCSPARDINAGYVAWGHSTLVAPFGEIVATTDHEEATIIADIDYSRIEERRLNMPLEKQRHGDLYQLVDVNRLDKEKH*

Protein Length: 390

Fln nts: CGTCGTGACCTTGGCTGTCGTGATTTTTCTGTCACTCATCGCTTTGGAGTCCATAGAATTTATTTTGGTGTAATCCTATTTTCGTTTGCGACATTTTACGTTTTATAGAGAAACCGGAATAACACCATTTGG_-_ATGGACGGCTTGTCTCTCGCCAATCGTATAAATCTAAAATATGCCACTGAGGCTGATCACTTGGTCTCAATCGGAGATGGCAGTAAGAGGATGACATCACTGCTCTCTTATTCCCTGCGAGTTGTGGTCTCTGCTTTCCCTTCAAAATCTTCAATAGCATCAACCGTAGGCCATTTATCTGCCACTCCAAAACGTTTTCTGGGCAATCGGCTGAAATTTTCTTATCGGAATTATATCTCTGCAATGGCTAAGCCAGAAGAAGCCAGGATTCCCCCAGCCGTGGCCCCTCCATCAGTTCCCAATGGCGGAAAGTTCAAAATCGCCTTGTGCCAGTTGTCTGTGACGGAGAACAAGGAGAGGAATATAGCGCATGCTCGTGCCGCTGTCGAGGCTGCAGCTGATAATGGCGCTCAGCTTGTAGTGTTGCCGGAGATATGGAATGGTCCATATTCAAATGCTAGTTTTCCAGTATATGCTGAAGACATAGATGCTGGTGGAAGTGCATCTCCTTCAACATCCATGCTTTCTGAAGTTGCTCGTAGCAAAGGGATCACAATAGTTGGTGGATCAATTTCGGAACGCAGTGGTGATCACCTCTACAACACATGTTGTGTATTTGGAAAAGATGGAGAACTGAAAGCTAAACACAGAAAGATACATCTTTTTGACATTGATATTCCTGGAAAGATTTCCTTTATGGAATCCAAAACACTTACAGCTGGCAATACCCCGACAATCGTAGACACAGATGTAGGGCGTATTGGGATTGGAATTTGTTATGATATCCGCTTTCAAGAATTGGCTATGCTGTATGCAGCAAGAGGTGCACACTTAATATGCTATCCTGGAGCTTTCAACATGACTACTGGTCCGCTTCATTGGGAGCTACTACAGAGAGCCAGGGCAGTCGATAATCAGCTGTATGTTGCTTCATGTTCACCTGCTCGTGACATAAATGCAGGCTATGTTGCCTGGGGCCACTCCACTCTCGTTGCGCCGTTTGGAGAAATTGTTGCAACAACGGACCATGAAGAAGCAACAATCATAGCAGATATTGACTATTCCCGAATAGAGGAAAGAAGGTTGAATATGCCACTTGAAAAGCAGCGACACGGTGATTTGTATCAACTCGTTGACGTTAACAGATTGGACAAAGAAAAGCATTGA___TCGCGTTTTACTCATTGATACTCAAAAAACATTGATCGTGTTTTTCATATTCGGAAGGGTTATTGTACAACTAATTTTATCTACATTGATTACAGTACCTGCCAGTTTCATCCAATATAAACGACTATGAATGCAATGAATAAGAATTTCATGGCCTCAAGAAATAGTCGTAGCATGCTCATGTTTCTTACATGTTGACAAGATATAGCCACGGGATTGTTTGACTATATCCGATGGATTGAGCTTTGGAGTGAATTGATCACACAAAACAAAAACACAATACTCAATTTTTATATTTATGTTTTTGTT

Fln Alignment:

sp_v1.1_unigene3364___AFPSKSSIASTVGHLSATPKRFLGNRLKFSYRNYISAMAKPEEARIPPAVAPPSVPNGGKFKIALCQLSVTENKERNIXXXXXXXXXXXXXXAQLVVLPEIWNGPYSNASFPVYAEDIDAGGSASPSTSMLSEVARSKGITIVGGSISERSGDHLYNTCCVFGKDGELKAKHRKIHLFDIDIPGKISFMESKTLTAGNTPTIVDTDVGRIGIGICYDIRFQELAMLYAARGAHLICYPGAFNMTTGPLHWELLQRARAVDNQLYVASCSPARDINAGYVAWGHSTLVAPFGEIVATTDHEEATIIADIDYSRIEERRLNMPLEKQRHGDLYQLVDVNRLDKEKH
A9NNV1______________ALRPKSSIASAVGRLSATPKRFPANRLRISYRNYNAAMAKPEDARSPPALPLPSAPNGGKFKIALCQLSVTENKERNIAHARDAIEAAADNGAQLVVLPEIWNGPYSNASFPVYAEDIDAGGSASPSTSMLSEVARSKGITIVGGSISERSGDHLYNTCCIFGKDGELKAKHRKIHLFDIDIPGKISFMESKTLTAGNTPTIVDTDVGRIGIGICYDIRFQELAMLYAARGAHLICYPGAFNMTTGPLHWELLQRARAIDNQLYVATCSPARDINAGYVAWGHSTLVAPFGEIVATTEHEEATVIADIDYSRIEERRMNMPLEKQRHGDLYQLVDVSRLDTAKH

SNPs (tot: 35)

Position	A %	C %	G %	T %	Probability
172		80		20	0.995493
199	83		16		0.994512
211	16		83		0.994512
397		11		88	0.923564
399	11			88	0.923564
419		10		90	0.90298
421	90	10			0.90298
685	44		55		1.0
705			11	88	0.923564
707		88	11		0.923564
708	11	88			0.923564
709	88	11			0.923564
711			11	88	0.923564
714	12	87			0.992554
716	87		12		0.992554
721	12	87			0.992554
723		87	12		0.992554
1308	13	80	6		0.999961
1362	50		50		1.0
1375		50	50		1.0
1415	90	10			1.0
1416	86	13			1.0
1417	3	6	89		0.998304
1420	81	11	3	3	1.0
1421	3	11		85	1.0
1424			88	11	1.0
1428		43	56		1.0
1500	10			90	0.999898
1579	50		50		1.0
1581	50	50			1.0
1582	50	50			1.0
1585	50		50		1.0
1588		50	50		1.0
1590		50	50		1.0
1595	50		50		1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain