SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene3340

Length: 951 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene3340

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	DNA repair metallo-beta-lactamase n=1 Tax=Medicago truncatula RepID=Q2HRV5_MEDTR	-	-	1.0e-37	68%
FL-Next	sp=DNA cross-link repair protein SNM1; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	64%
Blast2go	snm1 (sensitive to nitrogen mustard 1)	-	-	2.15954e-37	78%

Source	GOs	Term	Type	e value	Identity
Blast2go	DNA repair	GO:0006281	Biological Process	2.15954e-37	78%

Source	InterPros	Term	Type	e value	Identity
Blast2go	DNA repair metallo-beta-lactamase	IPR011084	-	2.15954e-37	78%

Full-Lengther Next Prediction

SNPs (tot: 6)

Position	A %	G %	T %	Probability
211	75		25	0.996473
462		12	87	0.992554
463		12	87	0.992554
586		14	85	0.993533
590		14	71	0.984337
829	83		16	0.994512

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain