SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene3336

Length: 1841 nt

Origin of reads: Biogeco_1 Biogeco_2 Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene3336

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Caryophyllene/humulene synthase n=1 Tax=Pinus sylvestris RepID=B4XAK4_PINSY	-	-	92%
FL-Next	tr=Caryophyllene/humulene synthase; Pinus sylvestris (Scots pine).	-	-	97%
Blast2go	longifolene synthase	-	-	77%

Source	InterPros	Term	Type	Identity
Blast2go	Terpene synthase-like	IPR001906	-	77%
Blast2go	Terpene synthase, metal-binding domain	IPR005630	-	77%
Blast2go	Terpenoid cylases/protein prenyltransferase alpha-alpha toroid	IPR008930	-	77%
Blast2go	Terpenoid synthase	IPR008949	-	77%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B4XAK4

Fln msg: Separated hits, possible frame ERROR between 255 and 302,

Fln protein: MAEICESVSVPRRTANYHGNVWDDEFIVSLNSPYGAPVYYERVGKLIEEIKHLLLSEMEDSNYDFIKRLQIVxxxxxxxxxxxxxxxxxKTAALDYVYRYWNEKGIAVGSRDSLSKDLDTTALGFRALRLHRYNVDSGVLENFKEGNGKFFCNFSGDKEVRSMLSLLRASEISFPGETVMEEAKTFTREYLNQVLVGRGEVNDADQSLLEEVKYALEFPWHCSAPRWEARSFIEIYGQNHSWLKSNFNQKVLELAKLDFNILQCIHQKEMQYITRWWRDSEVAQVNFYRRRHMELYFWAVICIFEPEFSQSRIAFAKVTTVGTVLDDLYDTYGMLDELKTITEGVRRWDISLIDDLPEKKKLQSSFSSIQRMNWPLKS*ASKGRTRQPY*KIPGCDTLSLICKKRNG*QLVVCRRLMST*RMPSLAQGCAS*IWFRFS*WVNLSRTTFCSKYILHLRSRGSQN*QSDSSTT*EISRMRRNAGRWLQS*SVT*KTILILPWKML*IK*RASFISPLRK*IGSFLSRTAYHCVVRSSLSI*HEAFNSSTNTEMAYPFLTTK*

Protein Length: 561

Fln nts: ATGGGGACATAAAATCGCATCGCAAAGTGTAGTGTT_-_ATGGCTGAGATTTGTGAATCAGTTTCCGTCCCTCGACGCACTGCCAATTACCACGGAAACGTGTGGGACGATGAGTTCATAGTATCTCTCAATTCGCCGTATGGGGCACCTGTATATTATGAACGTGTTGGGAAGCTTATTGAGGAGATCAAGCATTTACTTTTGAGCGAAATGGAGGATAGCAATTATGATTTTATCAAACGTCTGCAGATAGTTGAxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxTAAAACAGCTGCTCTAGATTACGTTTACAGATATTGGAACGAAAAGGGTATCGCGGTGGGATCAAGAGATTCTCTCAGCAAAGATCTGGACACTACAGCTCTAGGTTTTCGAGCTCTCCGACTGCATCGATATAACGTAGATTCAGGTGTGTTGGAGAATTTCAAAGAGGGAAACGGAAAATTCTTCTGCAATTTCAGTGGAGATAAAGAAGTGAGAAGCATGCTGTCGTTACTTCGAGCTTCAGAAATTTCATTTCCCGGAGAAACAGTGATGGAAGAGGCGAAGACATTCACCCGAGAGTATCTAAATCAAGTTTTGGTTGGACGCGGGGAAGTCAACGACGCAGATCAAAGCCTTCTGGAAGAGGTGAAGTATGCATTGGAGTTTCCATGGCATTGCAGTGCGCCCAGATGGGAGGCTCGCAGCTTTATTGAAATATATGGACAAAATCATTCGTGGCTCAAGTCGAATTTCAACCAAAAAGTTTTGGAGTTAGCCAAATTGGACTTCAATATCCTGCAATGCATACATCAGAAAGAGATGCAGTATATTACAAGGTGGTGGAGGGACTCAGAAGTTGCGCAGGTGAATTTCTATAGGAGACGTCACATGGAACTTTACTTCTGGGCGGTTATATGCATTTTCGAGCCCGAGTTTTCTCAAAGCAGAATCGCCTTCGCAAAAGTTACTACCGTCGGAACTGTTCTAGATGACCTTTATGATACCTACGGAATGCTAGATGAACTGAAAACCATCACAGAGGGAGTGAGACGATGGGATATTTCGTTAATAGATGACCTTCCGGAAAAAAAAAAATTGCAATCCAGTTTTTCTTCAATACAGCGAATGAACTGGCCGCTGAAGTCGTGAGCAAGCAAGGGCCGGACACGTCAGCCATATTAAAAGATACCTGGGTGCGATACCTTGAGTCTTATCTGCAAGAAGCGGAATGGATAACAACTGGTTGTGTGCCGACGTTTAATGAGTACATAAAGAATGCCGTCGCTAGCTCAGGGATGTGCATCGTAAATTTGGTTCCGCTTCTCTTGATGGGTCAACCTCTCCCGAACAACATTCTGCAGCAAATACATTCTCCATCTAAGATCCAGGGGCTCTCAGAATTGACAATCAGACTCATCGACGACTTAAGAGATTTCGAGGATGAGAAGGAACGCGGGGAGATGGCTTCAATCATAGAGTGTTACATAAAAGACAATCCTGATTCTACCGTGGAAAATGCTTTAAATCAAATAAAGGGCATCCTTCATCTCTCCCTTGAGGAAATGAATCGGGAGTTTCTTAAGCAGGACAGCGTACCATTGTGTTGTAAGAAGTTCACTTTCAATATAACACGAGGCCTTCAATTCCTCTACAAATACGGAGATGGCATATCCATTTCTAACAACGAAGTGA___AGGACCAGATCTTCAAAATTCTCGTGGAGCAAGTACCGATTGAGGAATAATGACGACTGCCTAACAAGTTTTTAATGTTGAAAACTGGAATTAGCACTTCAATAGTATAGTGGCAGATTTGGTTGGT

Fln Alignment:

sp_v1.1_unigene3336___MAEICESVSVPRRTANYHGNVWDDEFIVSLNSPYGAPVYYERVGKLIEEIKHLLLSEMEDSNYDFIKRLQIVDxxxxxxxxxxxxxxxxKTAALDYVYRYWNEKGIAVGSRDSLSKDLDTTALGFRALRLHRYNVDSGVLENFKEGNGKFFCNFSGDKEVRSMLSLLRASEISFPGETVMEEAKTFTREYLNQVLVGRGEVNDADQSLLEEVKYALEFPWHCSAPRWEARSFIEIYGQNHSWLKSNFNQKVLELAKLDFNILQCIHQKEMQYITRWWRDSEVAQVNFYRRRHMELYFWAVICIFEPEFSQSRIAFAKVTTVGTVLDDLYDTYGMLDELKTITEGVRRWDISLIDDLPEKKKLQSSF
B4XAK4______________MAEICESVSVPRRTANYHGNVWDDEFIVSLNSPYGAPAYYERVGKLIEEIKHLLLSEMEDSNYDFIKRLRIVDxxxxxxxxxxxxxxxxKTVALDYVYRYWNEKGIAVGSRDFLNRDLNTTALGFRALRLHRYNVDSGVLENFKDGNGKFFCNFSGDKEVRSMLSLLRASEISFPGEKVMEEAKAYTREYLNQVLAARGEVTGVDQSLREEVKYALEFPWHCSAPRWEARSFIEIYGENHSWLKSNFNQKVLELAKLDFNILQCIHQKEMQYITRWWRDSEVAQVNFYRRRHMELYFWAVISIFEPEFSQSRIAFAKVTTVGTVLDDLYDTYGMLDELKTITEGVRRWDISLIDDLPEKIKIAIQF

SNPs (tot: 18)

Position	A %	C %	G %	T %	Probability
34			83	16	0.994512
37	83			16	0.994512
149		50		50	1.0
277		75		25	0.996473
818		20		80	0.995493
875	20		80		0.995493
905	20		80		0.995493
926		20		80	0.995493
947		30		69	1.0
957		69		30	1.0
983	25		75		1.0
1019		53		46	1.0
1043		50		50	1.0
1091	45		54		1.0
1097		54		45	1.0
1546	20		80		0.999996
1733	66			11	0.999999
1738	12	87			0.992554

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain