SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene3330

Length: 1088 nt

Origin of reads: Biogeco_1 Uagpf Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v1.1_unigene3330 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	[R] COG2319 FOG: WD40 repeat	-	-	2.0e-30	25%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	22%
Blast2go	protein	-	-	0.0	70%

Source	InterPros	Term	Type	Identity
Blast2go	WD40 repeat	IPR001680	-	70%
Blast2go	WD40 repeat-like-containing domain	IPR011046	-	70%
Blast2go	WD40/YVTN repeat-like-containing domain	IPR015943	-	70%
Blast2go	WD40-repeat-containing domain	IPR017986	-	70%
Blast2go	WD40 repeat, conserved site	IPR019775	-	70%
Blast2go	WD40 repeat, subgroup	IPR019781	-	70%
Blast2go	WD40 repeat 2	IPR019782	-	70%
Blast2go	G-protein beta WD-40 repeat	IPR020472	-	70%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NPC1

Fln msg: your sequence is longer than subject: 353 - 314

Fln protein: RKTKNLNVLMMAIMQMYEDMMDRFKASRIEESARKLVDGVVRQSESGLENYVESSIPSTVRHTIHAHEGGCFSLLFEHNNDRIISGGQDMLVKIWDSNYGTLIGTLNGSLGSVQDIAVSGDNKFVIGASSDKKLYLWDLQSSRIRHTLTGHAEKDCATDISKLSNRQAVSAAYDRTIKIWDLHKGYVVNTICCHSICNAVSFTADGQHIYSGHTDGNLRCWDTRTGRSVNEVAAHSSSITSISLSRNGNVILTSGRDNLHNLFDVRSLEVCATFRAQGHKVASNWSRSCISADENYVTAGSADGTVYIWSRSSAAPVSTMKGHLAPVISCAWSNLGKPLASVDKNGYLHIWS*

Protein Length: 354

Fln nts: TGCGTAAGACCAAGAATCTGAACGTCTTAATGATGGCTATCATGCAAATGTATGAAGATATGATGGATCGTTTTAAAGCTAGCAGGATAGAAGAATCAGCACGGAAGCTGGTGGATGGTGTAGTGAGACAAAGTGAGTCAGGACTTGAGAACTATGTGGAATCAAGTATTCCATCTACTGTAAGACATACAATCCATGCCCATGAAGGTGGCTGCTTTTCTTTACTCTTTGAACACAACAATGATCGGATAATCTCTGGTGGACAAGACATGCTTGTGAAGATTTGGGATAGTAACTACGGCACCTTGATAGGTACATTAAATGGTTCCCTAGGCTCTGTTCAGGACATTGCTGTTTCTGGTGATAATAAATTTGTTATTGGAGCTAGCAGTGATAAAAAGTTGTATCTCTGGGATTTGCAGTCTAGTCGAATTCGTCATACTTTAACAGGGCATGCAGAGAAAGATTGTGCTACGGATATTAGCAAATTGTCAAATAGGCAAGCTGTGAGTGCTGCTTATGACAGAACCATCAAGATTTGGGATCTTCACAAAGGGTATGTGGTGAACACCATTTGCTGCCACAGCATCTGCAACGCTGTGTCTTTCACTGCAGATGGGCAACACATATACTCGGGACATACAGATGGAAATCTCCGCTGCTGGGACACACGGACCGGAAGATCAGTTAATGAAGTAGCTGCTCATTCCTCCAGTATAACCTCAATTTCTTTGTCACGCAATGGCAATGTTATTCTCACAAGTGGCAGGGACAACTTGCATAATCTGTTTGACGTGCGTTCATTGGAAGTCTGTGCGACTTTTAGAGCACAAGGTCACAAAGTAGCCAGTAATTGGAGTCGTTCATGTATCAGTGCTGATGAGAACTATGTTACAGCGGGTTCTGCAGATGGCACAGTATATATTTGGTCCCGGAGTTCAGCTGCTCCTGTTAGTACCATGAAGGGACACCTTGCTCCTGTGATTTCATGTGCATGGAGTAACCTTGGGAAGCCACTGGCTTCTGTTGATAAGAATGGATATCTGCATATATGGTCCTAG___TTGGATATTCGCAGTGAGTGACAGGCC

Fln Alignment:

sp_v1.1_unigene3330___DGVVRQSESGLENYVESSIPSTVRHTIHAHEGGCFSLLFEHNN-----------DRIISGGQDMLVKIWDSNYGTLIGTLNGSLGSVQDIAVSGDNKFVIGASSDKKLYLWDLQSSRIRHTLTGHAEKDCATDISKLSNRQAVSAAYDRTIKIWDLHKGYVVNTICCH---SICNAVSFT-ADGQHIYSGHTDGNLRCWDTRTGRSVNEVAAH
A9NPC1______________EGVSDMAWSSDSHYVCSASDDKTLRIWDVHTGDCIKTLKGHTNYVFCVNFNPQSNLIVSGSFDETVRIWDVRTGKCLKVLPAHSDPVTAVHFNRDGSLIVSSSYDGLCRIWDSATGHCLKTLIDDENPPVSFVNFSPNGKFILAGTLDNTLRLWNFATGKFLKTYTGHVNSKYCISSTFSVTNGKYIVSGSEDNCVYLWDLQARNIVQKLEGH

SNPs (tot: 26)

Position	A %	C %	G %	T %	Probability
217			66	33	1.0
330	20			80	0.995493
332	80			20	0.995493
335	80	20			0.995493
336	20			80	0.995493
337	80		20		0.995493
338	80	20			0.995493
341	20			80	0.995493
342			20	80	0.995493
344		80		20	0.995493
347		20		80	0.995493
348			20	80	0.995493
349	20		80		0.995493
1047	40	60			1.0
1048	60		40		1.0
1052		40		60	1.0
1058	40			60	1.0
1059		60	40		1.0
1060	60		40		1.0
1062		40		60	1.0
1064	60	40			1.0
1067		80		20	0.995493
1070			33	66	0.997452
1072		66	33		0.997452
1074		33	66		0.997452
1076			33	66	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain