SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene3314

Length: 1725 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v1.1_unigene3314 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	ATEHD1; ATEHD1 (EPS15 HOMOLOGY DOMAIN 1); GTP binding / GTPase/ calcium ion binding	-	-	79%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	93%
Blast2go	receptor-mediated endocytosis 1 isoform i	-	-	88%

Source	GOs	Term	Type	Identity
Blast2go	endocytosis	GO:0006897	Biological Process	88%
Blast2go	microsome	GO:0005792	Cellular Component	88%
Blast2go	endosome	GO:0005768	Cellular Component	88%
Blast2go	membrane	GO:0016020	Cellular Component	88%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LM82

Fln msg: your sequence is longer than subject: 471 - 170

Fln protein: MAMQIISLAQSGNEITADILKNTDLEMISPPAMEGLDEMISKGRRSPMKKGADSNGTSARAQLESAQWFTSKSTKKVSLNSVTSIIDGLKKLYIEKLKPLEVTYRFNDFCSPTLTSSDFDAKPMVMLLGQYSTGKTTFIKHLLRASYPGAHIGPEPTTDRFVVVMSGPDERSVPGNTVAVQADMPFSGLTRFGTAFLSKFECSQMPHPLLEHITFVDTPGVLSGEKQRTQRSYDFTGVTSWFATKCDLILLLFDPHKLDISDEFKRVIGSLRGHDDKIRVVLNKADQIDTQQLMRVYGALMWSLGKVLNTPEVNRVYIGSFNDKPINDAAIGPIGKDLFEREQEDLLSDLKDIPRKACDRRINEFVKRARAAKIHAYIIGHLKKEMPTMMGKAKVQQRLIDKLDEEFGKVQREYHLPAGDFPNVEHFKEVLSGYNFDKFEKIKLKMIQTVDDMLGYDIPDLLRKFRNPYD*

Protein Length: 472

Fln nts: ACGCATCACCGGAAACGATGCAGTCAACTTTTTTTCCCTATCCCAGCTCCCAAGACAGGAACTTAAACAGGTGTGGGCTGTTGCAGATTCAAAACGCCAAGGTTTTCTTGGATTCAAGGAGTTTGTT_-_ATGGCAATGCAGATAATTTCTCTAGCACAGAGTGGAAATGAGATAACTGCTGACATTCTGAAGAATACAGATTTGGAGATGATCAGTCCTCCAGCAATGGAAGGGTTGGATGAGATGATATCTAAAGGAAGGCGATCGCCCATGAAAAAGGGAGCAGATTCAAATGGTACATCAGCTCGAGCACAGCTGGAGTCAGCTCAGTGGTTTACATCAAAATCTACAAAGAAGGTTTCATTGAACTCAGTGACATCAATAATCGATGGTTTGAAGAAACTATATATAGAGAAGCTAAAGCCGTTGGAAGTTACTTACCGATTCAACGATTTCTGCTCACCCACTCTGACCAGCAGTGACTTTGATGCCAAGCCAATGGTTATGCTTTTAGGCCAGTATTCTACTGGAAAGACAACATTCATCAAACACTTGCTAAGAGCAAGTTATCCAGGGGCTCACATTGGACCAGAGCCAACTACAGATCGCTTTGTTGTTGTGATGTCAGGGCCTGATGAGAGAAGTGTACCTGGTAACACAGTTGCCGTGCAAGCAGATATGCCTTTTAGCGGGTTAACAAGATTTGGAACTGCTTTCCTCTCTAAATTTGAGTGTTCACAAATGCCACATCCTCTTCTGGAGCATATCACCTTTGTTGATACTCCAGGAGTTCTTTCTGGAGAGAAACAGCGTACACAACGCAGCTATGACTTCACTGGCGTGACTTCATGGTTTGCCACAAAGTGTGATCTTATATTATTGTTATTTGACCCTCACAAGCTTGATATTAGTGATGAATTTAAGCGTGTGATTGGCTCTCTTCGTGGCCATGATGATAAGATACGAGTAGTGCTCAACAAAGCAGATCAGATTGATACGCAACAGTTGATGAGAGTATATGGGGCATTGATGTGGTCGCTTGGAAAAGTTCTGAATACACCTGAAGTTAATCGGGTATATATTGGTTCATTCAATGATAAACCAATAAATGATGCAGCGATAGGTCCCATTGGAAAAGATTTATTTGAGAGGGAACAAGAAGATCTGCTGTCTGATTTAAAAGATATCCCTAGAAAGGCCTGTGACCGTCGTATAAATGAATTTGTAAAACGTGCTCGAGCAGCTAAGATTCATGCATACATCATCGGTCATCTGAAGAAAGAGATGCCTACCATGATGGGAAAGGCTAAGGTTCAACAGCGCCTCATTGATAAATTAGATGAGGAATTTGGAAAGGTTCAAAGGGAGTACCATTTACCTGCTGGTGACTTTCCAAACGTTGAACATTTCAAGGAAGTATTGAGTGGTTATAACTTCGATAAATTTGAGAAGATTAAACTAAAAATGATTCAGACAGTAGATGACATGCTAGGATATGACATTCCTGACTTACTGCGCAAGTTCCGCAACCCATACGACTGA___ATTGTTTGTAAATTTTTAATCTTGACATTTTATTATTCTCTGCCTGGATTTATTTGCAGAGATACATGTCACATGGATGTCATATCAGTGTGGTGCATATTGTGACCGATGTAATTGTTGCAATTTTTTCACTCTTGCAAAACTCTGGCATGCATGCAGCTCTGCCTATCTAATATTATGTTTAC

Fln Alignment:

sp_v1.1_unigene3314___MWSLGKVLNTPEVNRVYIGSFNDKPINDAAIGPIGKDLFEREQEDLLSDLKDIPRKACDRRINEFVKRARAAKIHAYIIGHLKKEMPTMMGKAKVQQRLIDKLDEEFGKVQREYHLPAGDFPNVEHFKEVLSGYNFDKFEKIKLKMIQTVDDMLGYDIPDLLRKFRNPYD
B8LM82______________MWSLGKVLNTPEVNRVYIGSFNDKPINDVAIGPIGKDLFEKEQEDLLSDLKDIPRKACDRRINEFVKRARAAKIHAYIISHLKKEMPAMMGKAKAQQRLIDNLDEEFAKVQREYHLPAGDFPSIEHFKEVLSGYNFDKFEKIKLKMIQSVDDMLGYDIPELLRKFRNPYD

SNPs (tot: 30)

Position	A %	C %	G %	T %	Probability
137	66			33	0.997452
138			33	66	0.997452
139	33	66			0.997452
140		66	33		0.997452
141	66			33	0.997452
143	33		66		0.997452
147	66	33			0.997452
148		33	66		0.997452
151			33	66	0.997452
152	33		33	33	0.997753
153	33		33	33	0.997753
154	33	33		33	0.997753
155	66		33		0.997452
156	33	33		33	0.997753
157	33		66		1.0
159		33		66	1.0
1461		84		15	0.999986
1615		72		27	1.0
1616		72	27		1.0
1619	72			27	1.0
1622	72	27			1.0
1624	72		27		1.0
1627	27			72	1.0
1628	27			72	1.0
1633	27		72		1.0
1634		27		72	1.0
1635			27	72	1.0
1636	27			72	1.0
1637		27		72	1.0
1688		14		85	0.993533

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain