SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene3309

Length: 1438 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene3309

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Aminophospholipid ATPase (Fragment) n=1 Tax=Populus trichocarpa RepID=B9I2N3_POPTR	-	-	64%
FL-Next	sp=Phospholipid-transporting ATPase 10; Arabidopsis thaliana (Mouse-ear cress).	-	-	60%
Blast2go	aminophospholipid atpase	-	-	77%

Source	GOs	Term	Type	e value	Identity
Blast2go	catalytic activity	GO:0003824	Molecular Function	0.0	77%
Blast2go	plasma membrane	GO:0005886	Cellular Component	0.0	77%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: sp_plants

Fln subject: Q9LI83

Fln msg: Unexpected stop codon in the beginning of your sequence, your sequence is shorter than subject: 284 - 1202

Fln protein: VVTLAVQE**PWLSLIYFEAYASFSGQAAYNDWYMSLFNVFFTSLPVIALGVFEQDVSARFCLQFPLLYQEGLQNILFRWARIFGWMFNGICSSTIIFFFSTNILKHQAFRHGGQVSGMEVLGATMYTCIVWTVNCQIALAISYFTWIQHLVIWGSIAFWYLFLFVYGSIKPTFSTTAYKVLVEACGPSPMYWFITLLVVISALVPYFTYTAFERRFFPLYHSLIQWARHEGIYEDPVLQTIPVHRIHVGFTARVEAGIEHFKNKIRHSHNGDRVTGLQNDSH*

Protein Length: 285

Fln nts: CGTCGTGACCTTGGCTGTACAAGAATAATGACCTTGGCTGTCCCTCATTTATTTTGAAGCATATGCTTCATTTTCCGGACAAGCAGCATATAATGACTGGTACATGTCACTTTTCAATGTCTTTTTCACTTCGCTTCCAGTTATCGCATTGGGAGTTTTTGAGCAAGATGTATCTGCACGTTTCTGCCTACAGTTTCCGCTTCTGTATCAGGAAGGACTACAAAATATCCTGTTTCGTTGGGCTCGGATTTTTGGCTGGATGTTTAATGGGATTTGTAGTTCTACCATTATTTTCTTTTTCTCTACAAACATCCTTAAGCATCAGGCATTTCGACATGGTGGTCAAGTTTCAGGTATGGAGGTCCTTGGAGCAACCATGTATACTTGCATTGTCTGGACAGTAAATTGCCAGATAGCACTGGCCATCAGTTATTTCACGTGGATACAGCATCTAGTAATATGGGGCAGTATTGCATTCTGGTATTTGTTTCTTTTTGTATATGGATCTATTAAACCAACATTTTCGACTACAGCATACAAAGTTCTTGTTGAAGCTTGTGGCCCCAGTCCTATGTACTGGTTCATTACACTACTTGTTGTTATCTCCGCTCTAGTTCCTTACTTCACATATACAGCTTTCGAAAGAAGGTTCTTTCCTTTGTATCACAGCCTTATTCAATGGGCAAGGCATGAAGGTATATATGAAGACCCAGTGCTACAAACGATTCCAGTGCATAGGATTCATGTTGGTTTTACCGCAAGAGTTGAAGCCGGCATTGAGCACTTTAAGAACAAAATCCGTCATAGCCACAATGGTGACAGAGTAACGGGTTTGCAGAATGACTCACACTAG___GCATCTATCACCGTTTTGGTTGGGGCCTGTCTAATTTATTGATCATTTGATTTAGTGGACTTGAAATGTGAGCAAAAAGTTGAACCAATAGTTCGAATGGAAGACCCTGGTTCCATCTCTGTTTCTGTTCAGCAGTAGTCAAGACAATCAGACATTGTTTGGCTACTTATTTTGAGGCCTTACAGGGAAAACAGGTAGAAATTACAAGGCTTGGCCTTGGTTTGAGTGTGTTCACACTGGCTTTAAGGACAGAAAGAAATATGCTAGCATATTCTTTGATTTGTGGATGGTTTCCAACAAGGCCGAGTCCATCATAGGGTCATTCATTATCAGATCACCATATTCTTTTACTTGTAAATCATTGTAACAAATATCTTTGTATTTTAATGCCTCTTTCCTCGTATATAAGATTTGAGCATAGGATAAAACCAGAATTCTGTAAAGATTTTAGGTTTGCATTCTGTTATTCAGATGAAAGGATGACTATATTCGTAGCTCTGGTATTTCAAATGTACTTAGAGCTTTCATATTTAGTTGTTATAATAATGGTTTCACTATTCAGGTATATCCAAGGCACGGAGGATG

Fln Alignment:

sp_v1.1_unigene3309___LSLIYFEAYASFSGQAAYNDWYMSLFNVFFTSLPVIALGVFEQDVSARFCLQFPLLYQEGLQNILFRWARIFGWMFNGICSSTIIFFFSTNILKHQAFRHGGQVSGMEVLGATMYTCIVWTVNCQIALAISYFTWIQHLVIWGSIAFWYLFLFVYGSIKPTFSTTAYKVLVEACGPSPMYWFITLLVVISALVPYFTYTAFERRFFPLYHSLIQWARHEGIYEDP----VLQTIPVHRIHVGFTARVEAGI
Q9LI83______________VTVFLYEAYTSFSGQPAYNDWFLSLFNVFFSSLPVIALGVFDQDVSARFCYKFPLLYQEGVQNILFSWKRIIGWMFNGFISALAIFFLCKESLKHQLFDPDGKTAGREILGGTMYTCVVWVVNLQMALSISYFTWVQHIVIWGSIAFWYIFLMIYGAMTPSFSTDAYMVFLEALAPAPSYWLTTLFVMIFALIPYFVYKSVQMRFFPKYHQMIQWIRYEGHSNDPEFVEMVRQRSIRPTTVGYTARRAASV

SNPs (tot: 11)

Position	A %	C %	G %	T %	Probability
834	87			12	0.992554
835		87	12		0.992554
841			12	87	0.992554
972			14	85	0.999981
975	85			14	0.999981
977		85	14		0.999981
978			14	85	0.999981
983		14		85	0.999981
984	14			85	0.999981
987		14	85		0.999981
1353		14	85		0.993533

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain