SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene3301

Length: 2415 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene3301
CGTCGTGACCTTGGCTGTCACTCAGCCTCTGCACATTTTACCTCTCAGACTCATTCCTCTGGGCCATCATCAGAACTTCGTCCCTCTTCCTGTACTGTACGTCATGGGAGAATGATGCTCTTTGCTGCACAAAGATCTTCTTGATCCCTTCCTCTTAATGGCGCTGGCGGTGGACTTTACTGATCTTTACCATTAAAATACACGACCCTGCTTTTCAATGGCGGTAGACAATATGGATGGATTGGGACTGGAATAGCCCTTACGGTTCAGAGAGTTTCGCTTCGCTTGGCAGCTCTGTTGCACTTGTCTTCGAGCCAACACTTCAACTTCTCTTCCGGTTACCAGTTATTTAAATAGGCACATGAATAATGGACGCGAGAGGTCCAAATCCGTTCCCACAATGCGCTTCCCTATAATTTCGCCCAAATCTTTAACGATTGCTTTTGAATTTGCGGGAGCTCCCTCTTGTTTAATTTTCAGGTTTTCGCGTTACAGCAGGCGCAGTGGATTATCTGTAGCATTGATTATGGATTCAACAGGTTGGAGGATCGATTCCCGCAATGCATTATTGTTTCTATGTATGTTAGCGATAATTCACGCGGGCGTTACTGTGAATGCGGCGAAGCCACCTGTAACAAACGCGTACGCGACAATGATGTACATGGGGACGCCAAGAGACTACGAGTTTTATGTGGCTGTGCGTGTAATGCTTCGGTCCCTCCGCCGTCTCAATGTGGACGCAGACCTTGTTGTCATCGCTTCCAGAGACGTTCCACAACCATGGATCAACAAACTGCATGGGGATGGTGTCAAGGTAGTCATGGTCGACAACATGGAGAATCCATACAGACACCAATCGAATTTCGACAAACGCTTTACTCTCACCCTCAACAAATTATACGCATGGAATCTCGTCGAGTATGAGCGTGTTGTCATGCTGGATGCAGACAATCTATTTCTGCAAAAAACCGATGAGCTTTTCCAATGTGGGCAGTTCTGTGCTGTCTTCATTAATCCCTGCATCTTCCACACGGGACTCTTCGTTTTACAGCCATCAGAGGTTGTGTTCAAGGATATGTTGAAGCAGCTTGCCAGTGGCCGAGAAAACGAAGATGGTGCAGACCAAGGATTTCTCACAGGATATTTTGATGATATGTTAGGCAAACCTATGTTCCGTCCTAAATTGAATGGATCCAGACAAAATGGGTTATTTCGTCTGCCATTGGGATACCAAATGGACGCATCATACTACTATTTAAAGTTGAGATGGAGCGTACCGTGTGGACCCAACAGTGTGATAACTTACCCAGGTGCTCCATGGTTTAAACCATGGTACTGGTGGTCATGGCCAGTATTGCCACTGGGCATTTCGTGGCACAAACAACGATTAGATACAATAGGGTACGATGAAGAACTACCAGTGGTTGTGATAGAGGCAATTATATACCTGATGATTATGGTCATTGCCAAATTTAGGGGCTTCTTTCTCAACTCAAAGGGTTACTTCTACAGATCCTTTGACAGGGAGCACTGTCGGCATCCTCTGTTTGTGAGAACAATAGGGATATCATGTTTATTGGGAGGTTATCTGATTCCTTGCTTGTTGATACCCAAAACAACACACCCATTATGGGGGTGGGGGCTCTATTTGCTCGGTTCAATGTCTCTTGTATATTCTACCATTAAAGCATATCCAATTCCAGTTTTGGCGGCGTTTACTCTGTGGATGGGCATATTGGGCGTGCTTCTAGTGATGGCGTGTACTCTATATCCTGATGGGGTGGTGAGAGCGATGTCGGTGTTTATTTATGCAGTAGTGGCAATCCCAATAGCGTGGTCGGCCATTATCAGAGTGGCGAGGTCTCTTGATTACACCATTGACAGAGAATCACAGTCCCAACTATCTGATCAGCTCATAAAAGCGTGTTGATGAAGTTTGGTTTCATCTCCCAACAACATTCCTTCAGCTTTTTATGACCTCCCCTGTAACTTCATCCTCCCCACACAACGTTGCTTCAGCTTCTATGGTTCACCTTTTTATTTACATGTTACTGCATCCATCCATGGTCGACAGTGACAGAGATTGTTCGGACTGTTTACGAAGTTTTCATTTTTGACATGAACATGGTTAATCTCGACTGAGCTGACCCATACTATCGGAGTTAACCCATTAGAAGTTGTATGCACTGATAGTTCAACAGGTTCAAGTTCAGTTTTCTTGCAATCTTAGATATTGTATTGACTGATCTCTCAAACGGTCAAGGTCAGTTTTCCTGGAATTATAGAAGTGGTATTGACTTATCTCTCAANACGTTCATGTTCAGTTTTCTTGTGATCTGGTAGTAGGAACGAAAGTTCTACGCTCTGTTCATGTCCTCTTATTACAAGGAAGTTAATATTGTTAGTTTAAACGGT

Ace file of the UniGene sp_v1.1_unigene3301

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Glucosyltransferase, putative n=1 Tax=Ricinus communis RepID=B9SSF3_RICCO	-	-	61%
FL-Next	tr=Glucosyltransferase, putative; Ricinus communis (Castor bean).	-	-	61%
Blast2go	transferring glycosyl groups	-	-	71%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Glycosyl transferase, family 8	IPR002495	-	0.0	71%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: tr_plants

Fln subject: B9SSF3

Fln msg: your sequence is longer than subject: 523 - 483

Fln protein: MNNGRERSKSVPTMRFPIISPKSLTIAFEFAGAPSCLIFRFSRYSRRSGLSVALIMDSTGWRIDSRNALLFLCMLAIIHAGVTVNAAKPPVTNAYATMMYMGTPRDYEFYVAVRVMLRSLRRLNVDADLVVIASRDVPQPWINKLHGDGVKVVMVDNMENPYRHQSNFDKRFTLTLNKLYAWNLVEYERVVMLDADNLFLQKTDELFQCGQFCAVFINPCIFHTGLFVLQPSEVVFKDMLKQLASGRENEDGADQGFLTGYFDDMLGKPMFRPKLNGSRQNGLFRLPLGYQMDASYYYLKLRWSVPCGPNSVITYPGAPWFKPWYWWSWPVLPLGISWHKQRLDTIGYDEELPVVVIEAIIYLMIMVIAKFRGFFLNSKGYFYRSFDREHCRHPLFVRTIGISCLLGGYLIPCLLIPKTTHPLWGWGLYLLGSMSLVYSTIKAYPIPVLAAFTLWMGILGVLLVMACTLYPDGVVRAMSVFIYAVVAIPIAWSAIIRVARSLDYTIDRESQSQLSDQLIKAC*

Protein Length: 524

Fln nts: CGTCGTGACCTTGGCTGTCACTCAGCCTCTGCACATTTTACCTCTCAGACTCATTCCTCTGGGCCATCATCAGAACTTCGTCCCTCTTCCTGTACTGTACGTCATGGGAGAATGATGCTCTTTGCTGCACAAAGATCTTCTTGATCCCTTCCTCTTAATGGCGCTGGCGGTGGACTTTACTGATCTTTACCATTAAAATACACGACCCTGCTTTTCAATGGCGGTAGACAATATGGATGGATTGGGACTGGAATAGCCCTTACGGTTCAGAGAGTTTCGCTTCGCTTGGCAGCTCTGTTGCACTTGTCTTCGAGCCAACACTTCAACTTCTCTTCCGGTTACCAGTTATTTAAATAGGCAC_-_ATGAATAATGGACGCGAGAGGTCCAAATCCGTTCCCACAATGCGCTTCCCTATAATTTCGCCCAAATCTTTAACGATTGCTTTTGAATTTGCGGGAGCTCCCTCTTGTTTAATTTTCAGGTTTTCGCGTTACAGCAGGCGCAGTGGATTATCTGTAGCATTGATTATGGATTCAACAGGTTGGAGGATCGATTCCCGCAATGCATTATTGTTTCTATGTATGTTAGCGATAATTCACGCGGGCGTTACTGTGAATGCGGCGAAGCCACCTGTAACAAACGCGTACGCGACAATGATGTACATGGGGACGCCAAGAGACTACGAGTTTTATGTGGCTGTGCGTGTAATGCTTCGGTCCCTCCGCCGTCTCAATGTGGACGCAGACCTTGTTGTCATCGCTTCCAGAGACGTTCCACAACCATGGATCAACAAACTGCATGGGGATGGTGTCAAGGTAGTCATGGTCGACAACATGGAGAATCCATACAGACACCAATCGAATTTCGACAAACGCTTTACTCTCACCCTCAACAAATTATACGCATGGAATCTCGTCGAGTATGAGCGTGTTGTCATGCTGGATGCAGACAATCTATTTCTGCAAAAAACCGATGAGCTTTTCCAATGTGGGCAGTTCTGTGCTGTCTTCATTAATCCCTGCATCTTCCACACGGGACTCTTCGTTTTACAGCCATCAGAGGTTGTGTTCAAGGATATGTTGAAGCAGCTTGCCAGTGGCCGAGAAAACGAAGATGGTGCAGACCAAGGATTTCTCACAGGATATTTTGATGATATGTTAGGCAAACCTATGTTCCGTCCTAAATTGAATGGATCCAGACAAAATGGGTTATTTCGTCTGCCATTGGGATACCAAATGGACGCATCATACTACTATTTAAAGTTGAGATGGAGCGTACCGTGTGGACCCAACAGTGTGATAACTTACCCAGGTGCTCCATGGTTTAAACCATGGTACTGGTGGTCATGGCCAGTATTGCCACTGGGCATTTCGTGGCACAAACAACGATTAGATACAATAGGGTACGATGAAGAACTACCAGTGGTTGTGATAGAGGCAATTATATACCTGATGATTATGGTCATTGCCAAATTTAGGGGCTTCTTTCTCAACTCAAAGGGTTACTTCTACAGATCCTTTGACAGGGAGCACTGTCGGCATCCTCTGTTTGTGAGAACAATAGGGATATCATGTTTATTGGGAGGTTATCTGATTCCTTGCTTGTTGATACCCAAAACAACACACCCATTATGGGGGTGGGGGCTCTATTTGCTCGGTTCAATGTCTCTTGTATATTCTACCATTAAAGCATATCCAATTCCAGTTTTGGCGGCGTTTACTCTGTGGATGGGCATATTGGGCGTGCTTCTAGTGATGGCGTGTACTCTATATCCTGATGGGGTGGTGAGAGCGATGTCGGTGTTTATTTATGCAGTAGTGGCAATCCCAATAGCGTGGTCGGCCATTATCAGAGTGGCGAGGTCTCTTGATTACACCATTGACAGAGAATCACAGTCCCAACTATCTGATCAGCTCATAAAAGCGTGTTGA___TGAAGTTTGGTTTCATCTCCCAACAACATTCCTTCAGCTTTTTATGACCTCCCCTGTAACTTCATCCTCCCCACACAACGTTGCTTCAGCTTCTATGGTTCACCTTTTTATTTACATGTTACTGCATCCATCCATGGTCGACAGTGACAGAGATTGTTCGGACTGTTTACGAAGTTTTCATTTTTGACATGAACATGGTTAATCTCGACTGAGCTGACCCATACTATCGGAGTTAACCCATTAGAAGTTGTATGCACTGATAGTTCAACAGGTTCAAGTTCAGTTTTCTTGCAATCTTAGATATTGTATTGACTGATCTCTCAAACGGTCAAGGTCAGTTTTCCTGGAATTATAGAAGTGGTATTGACTTATCTCTCAAaACGTTCATGTTCAGTTTTCTTGTGATCTGGTAGTAGGAACGAAAGTTCTACGCTCTGTTCATGTCCTCTTATTACAAGGAAGTTAATATTGTTAGTTTAAACGGT

Fln Alignment:

sp_v1.1_unigene3301___KPPVTNAYATMMYMGTPRDYEFYVAVRVMLRSLRRLNVDADLVVIASRDVPQPWINKLHG-DGVKVVMVDNMENPYRHQSNFDKRFTLTLNKLYAWNLVEYERVVMLDADNLFLQKTDELFQCGQFCAVFINPCIFHTGLFVLQPSEVVFKDMLKQLASGRENEDGADQGFLTGYFDDMLGKPMFRPKLNGSRQNGLFRLPLGYQMDASYYYLKLRWSVPCGPNSVITYPGAPWFKPWYWWSWPVLPLGISWHKQRLDTIGYDEELPVVVIEAIIYLMIMVIAKFRGFFLNSKGYFYRSFDREHCRHPLFVRTIGISCLLGGYLIPCLLIPKTTHPLWGWGLYLLGSMSLVYSTIKAYPIPVLAAFTLWMGILGVLLVMACTLYPDGVVRAMSVFIYAVVAIPIAWSAIIRVARSLDYTIDRE
B9SSF3______________RPRHRNAYATMMYMGTPRDYEFYVATRVLIRSLSKLHVDADLVVIASIDVPLRWIHALEQEDGARVVRVENVNNPYKNQPHFDRRFKLTLNKLYAWSLVDYDRVVMLDADNLFLRKTDELFQCGQFCAVFINPCIFHTGLFVLQPSKLVFKDMLHQLEIGKDNPDGADQGFIGGYFPDLLDKPMFYPPANGTALEGSYRLPLGYQMDATYYYLRLRWNVPCGPNSVITFPGAPWLKPWYWWSWPVLPLGLQWHEQRLQSLGYAAELPMVFIQSIIYIGIIAVTRLAR--PNISKLCYRRTDKNISLIQAGLKLIAIWSILAAYVLPFFIIPCTIHPLLGWALYLLGSFALCSIAINAFMLPMVHVLTPWLGIFGVLLVMAFPWYPDGVVRALSIFGYAFCCAPFAWVSLVKVMACLQVSLERE

SNPs (tot: 57)

Position	A %	C %	G %	T %	Probability
749		75	25		0.996473
750			25	75	0.996473
751		25	25	50	0.995533
752	25		75		0.996473
821	50		50		1.0
972		80	20		0.995493
974			80	20	0.995493
975	80		20		0.995493
977		20	80		0.995493
979			80	20	0.995493
1340		10		90	0.90298
1459	42			57	1.0
1475		12		87	0.992554
1476			12	87	0.992554
1478	87	12			0.992554
1481	12		87		0.992554
1482		12	87		0.992554
1486		87	12		0.992554
1487			12	87	0.992554
1488		12		87	0.992554
1490		87	12		0.992554
1496		12		87	0.992554
1588		10	90		0.90298
1589	10		90		0.90298
1615	11	88			0.923564
1629		88	11		0.923564
1630		88		11	0.923564
1631		88		11	0.923564
1632	77		22		0.999999
1634		11	11	77	0.968132
1636		22		77	0.999999
1637		11	66	11	0.944822
1638		11	77	11	0.968132
1639	11		77	11	0.968132
1642		11		88	0.923564
1643			77	11	0.968132
1645			88	11	0.923564
1646		11	88		0.923564
1647	11		88		0.923564
1651	11			88	0.923564
1655		11		88	0.923564
1768	88	11			0.923564
1950	85		14		0.999981
1954		85	14		0.999981
1955	14	85			0.999981
1957	85	14			0.999981
1958	85			14	0.999981
1959		85		14	0.999981
1960	85		14		0.999981
1961	85		14		0.999981
1963	85			14	0.999981
1964			14	85	0.999981
1967	14	85			0.999981
1968		14		85	0.999981
2040		13		86	0.999973
2312		14		85	0.993533
2316	50	50			1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain