SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene3298

Length: 1576 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene3298

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Somatic embryogenesis receptor-like kinase 1 n=2 Tax=Coniferales RepID=D1MEH6_9CONI	-	-	99%
FL-Next	tr=Somatic embryogenesis receptor-like kinase 1; Araucaria angustifolia.	-	-	99%
Blast2go	somatic embryogenesis receptor kinase	-	-	97%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: D1MEH6

Fln msg: your sequence is shorter than subject: 303 - 630

Fln protein: SLVAVKRLKEERTPGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERLLVYPYMANGSVASCLRERAPNDPPLDWPTRKRIALGSARGLSYLHDHCDPKIIHRDVKAANILLDEEYEAVVGDFGLAKLMDYKDTHVTTAVRGTIGHIAPEYLSTGKSSEKTDVFGYGIMLLELITGQRAFDLARLANDDDVMLLDWVKGLLKERRLDMLVDPDLKNNYVEAEVEQLIQVALLCTQGSPMDRPKMSEVVRMLEGDGLAERWEEWQKVEVVRSQEVELVPHRNSEWIVDSTDNLHAVELSGPR*

Protein Length: 304

Fln nts: TTCCTTGGTGGCTGTAAAACGTCTGAAGGAAGAGCGTACACCAGGTGGAGAGTTGCAGTTTCAAACAGAAGTGGAGATGATAAGCATGGCAGTACATAGGAATCTCCTTCGACTACGTGGATTCTGCATGACACCCACTGAACGGCTGCTTGTTTATCCTTACATGGCCAATGGAAGTGTTGCTTCATGCCTACGAGAGAGGGCACCGAATGACCCACCCTTAGATTGGCCAACTCGCAAGCGCATAGCATTGGGTTCTGCAAGAGGTCTCTCCTACTTGCATGATCATTGTGATCCTAAGATTATTCACCGGGATGTCAAGGCTGCTAACATCTTACTGGATGAAGAATACGAGGCAGTGGTGGGGGATTTTGGCTTGGCAAAACTTATGGATTATAAGGACACACATGTTACGACGGCTGTTCGTGGAACCATTGGCCACATAGCACCTGAGTACCTTTCTACTGGAAAGTCTTCGGAAAAGACAGACGTATTTGGTTATGGAATCATGTTGCTGGAACTTATTACAGGACAACGGGCATTTGACCTTGCACGTTTAGCAAATGATGATGATGTCATGTTGCTTGACTGGGTTAAAGGCCTATTAAAAGAGAGAAGGCTTGATATGCTAGTTGATCCTGATCTTAAGAACAATTATGTTGAAGCAGAGGTGGAACAACTTATTCAAGTTGCATTACTTTGTACACAAGGGTCACCAATGGATAGACCAAAGATGTCTGAAGTGGTACGGATGTTGGAAGGGGATGGCTTAGCCGAGAGATGGGAGGAATGGCAAAAGGTGGAAGTCGTACGGAGCCAAGAAGTTGAACTTGTTCCTCATAGAAATTCAGAATGGATTGTCGACTCAACAGATAATCTTCATGCAGTTGAATTGTCTGGTCCAAGATGA___TAAGAGTTGAATTGTTTATTCAATCTTTGCAAAGCCAAAATTTTATTGAGTCCAAATTACAATGTCAATATGTATCGAGGTTGAATCGATGTATCATTTTCAAGCATATTTTAGTAGATGCGTCAATGTGCGAATGTAGAGAATATTCGTTGCAAGTCCTTAGATGGCTATGCTGGGTTTTGTCCCATGAGAATTTCTGTCGGGTTGCAGTCAAACCCGAAAGTTAGAAGGATTTCTTATGGTGCATCCCATCCAGGCAAAGATCTGGGCTCCTGTATTATGAATGGTTTGCTCTAGGAATCGAAGCTCCATTTCTGCTATTGAAGACTTCCTTTTTCAGTGCTAATATGTATTTAAACAGTCTGTCCACTTGACATATGCAACTACTTTTCCTGCCGAGAGTGTACTTTGATAAGACCACAATCTTTTGAGACTAGTACTAAATTTGGTCTCAGTTTCAAATCCAGAGTGGAAAATGAAGGAAAACAAATTTCATGAGTACCAAGCTTCTCCTAAATCCCATGAGCTGGGCTCTTAAATTCTCGATAATCCTCCGGAGTTTGAGAAAGATGTATGTTGTCAAAGGTAGATCTCAAGCTAGTGGATTCCTTAGTTTCACGGAATTGTTTTCTTAGAGCCAGACACATGCTCCTGAGTTACATTAAA

Fln Alignment:

sp_v1.1_unigene3298___SLVAVKRLKEERTPGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERLLVYPYMANGSVASCLRERAPNDPPLDWPTRKRIALGSARGLSYLHDHCDPKIIHRDVKAANILLDEEYEAVVGDFGLAKLMDYKDTHVTTAVRGTIGHIAPEYLSTGKSSEKTDVFGYGIMLLELITGQRAFDLARLANDDDVMLLDWVKGLLKERRLDMLVDPDLKNNYVEAEVEQLIQVALLCTQGSPMDRPKMSEVVRMLEGDGLAERWEEWQKVEVVRSQEVELVPHRNSEWIVDSTDNLHAVELSGPR
D1MEH6______________SLVAVKRLKEERTPGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERLLVYPYMANGSVASCLRERAQNDPPLDWPTRKRIALGSARGLSYLHDHCDPKIIHRDVKAANILLDEEYEAVVGDFGLAKLMDYKDTHVTTAVRGTIGHIAPEYLSTGKSSEKTDVFGYGIMLLELITGQRAFDLARLANDDDVMLLDWVKGLLKERRLDMLVDPDLKNNYVEAEVEQLIQVALLCTQGSPMDRPKMSEVVRMLEGDGLAERWEEWQKVEVVRSQEVELVPHRNSEWIVDSTDNLHAVELSGPR

SNPs (tot: 18)

Position	A %	C %	G %	T %	Probability
192			10	90	0.90298
193	90			10	0.90298
196	90			10	0.90298
199		10	90		0.90298
200	90	10			0.90298
201			90	10	0.90298
202			90	10	0.90298
205	90		10		0.90298
207		90		10	0.90298
212		10	90		0.90298
216	10	90			0.90298
238		90		10	0.90298
247	90			10	0.90298
803	11		88		0.999952
1229	8	92			0.999718
1308		55		44	1.0
1321		5		94	0.998578
1327			94	5	0.998744

SSRs (tot: 1)

Start position	End position	Sequence	Length
564	575	ATG ATG ATG ATG	12

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain