SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene3285

Length: 680 nt

Origin of reads: Biogeco_1 Biogeco_2 Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v1.1_unigene3285 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Os06g0245700 protein (Fragment) n=4 Tax=Oryza sativa RepID=Q0DD82_ORYSJ	-	-	72%
FL-Next	tr=Putative uncharacterized protein; Oryza sativa subsp. japonica (Rice).	-	-	72%
Blast2go	golgi alpha-mannosidase ii	-	-	78%

Source	ECs	Term	Type	e value	Identity
Blast2go	Alpha-mannosidase.	EC:3.2.1.24	-	0.0	78%

Source	KEGGs	Term	Type	e value	Identity
Blast2go	Other glycan degradation	00511		0.0	78%

Source	GOs	Term	Type	Identity
Blast2go	protein N-linked glycosylation	GO:0006487	Biological Process	78%
Blast2go	alpha-mannosidase activity	GO:0004559	Molecular Function	78%
Blast2go	Golgi apparatus	GO:0005794	Cellular Component	78%

Source	InterPros	Term	Type	Identity
Blast2go	Glycoside hydrolase, family 38, core	IPR000602	-	78%
Blast2go	Glycoside hydrolase/deacetylase, beta/alpha-barrel	IPR011330	-	78%
Blast2go	Glycoside hydrolase, family 38, central domain	IPR015341	-	78%

Full-Lengther Next Prediction

SNPs (tot: 5)

Position	A %	C %	G %	T %	Probability
247		25		75	0.996473
317		87		12	0.992554
338		12	87		0.992554
339	12	87			0.992554
357	85		14		0.993533

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain