SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene3276

Length: 1830 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene3276

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	(S)-2-hydroxy-acid oxidase, putative n=1 Tax=Ricinus communis RepID=B9ST69_RICCO	-	-	69%
FL-Next	tr=Glycerate oxidase; Pinus pinaster (Maritime pine).	-	-	96%
Blast2go	protein	-	-	82%

Source	GOs	Term	Type	e value	Identity
Blast2go	catalytic activity	GO:0003824	Molecular Function	0.0	82%
Blast2go	peroxisome	GO:0005777	Cellular Component	0.0	82%

Source	InterPros	Term	Type	Identity
Blast2go	FMN-dependent dehydrogenase	IPR000262	-	82%
Blast2go	FMN-dependent alpha-hydroxy acid dehydrogenase, active site	IPR008259	-	82%
Blast2go	Alpha-hydroxy acid dehydrogenase, FMN-dependent	IPR012133	-	82%
Blast2go	Aldolase-type TIM barrel	IPR013785	-	82%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: F4MKM3

Fln msg:

Fln protein: MAAEPVNVNEFSTLARNVLPKMIYDFYAGGAEDEWTLRENVAAFQRTRLRPRVLVDVSNVDLSTTILGFKISAPIMIAPTAMHKLAHPEGELATARAAAAAGTIMVLSFSATSTVEEVAATCDAVRFFQLYVYKNRSISAVLAQRAERAGYKAIVLTADTPKLGRREADIRNKLVVPTLKNLEGLLSINMDTEKGSGLASYASQTLDSSFSWKDIKWLQSLTSLPILIKGILTAEDAELAIQAGFAGIIVSNHGARQLDFVSSTIVALEEVTKAVRGRVPVLFDGGIRRGTDVFKALAIGAQAVLVGRPIIYGLAVKGESGVKKVLEMLQDELELAMSLSGCCRVEEITRSHVQTENEIIRSML*

Protein Length: 366

Fln nts: CGTCGTGACCTTGGCTGTCACTCAATTGGAAAAACTTGTACTCAGTTCGACATTATTGACAATATACCGACAAGATTAAATATTACAGAGACCAAATCCATCACCTCTGAATGGAGAGTCTATTTCGACATTATTGACAATATACCGACCAAGATTAAATATTACAGAGAGCAAATCCATCGCCTCTGATTGGAGAGTCTCAAAGGAGATTCCGTTCGTCATCGATTAATACTGTTATGCTTACACAGAGGTAAACCAACATCGTACTATGATTTTATAACGATCGGGCGAGCGGGCGTGCAGGCTGCAGCACATATAAGTTGCACAGGGCATCTTGCAATAAATCAAGAAAATCTCTACTGGCAAGATAATTGCAGATTTGGACAACAATATATTCAGTCTGGATTAAACATCACATAAGATATTATCACAGTAGGGAAACA_-_ATGGCTGCTGAGCCTGTAAATGTGAATGAATTCAGTACGCTAGCAAGGAATGTCCTCCCCAAGATGATATATGATTTCTATGCCGGAGGTGCTGAGGATGAATGGACTCTTCGAGAAAATGTTGCTGCCTTCCAAAGAACCAGGTTGCGCCCCCGAGTTTTAGTAGATGTAAGTAATGTGGATTTGTCAACTACAATATTGGGATTCAAGATCTCTGCACCAATCATGATTGCTCCAACGGCTATGCATAAACTAGCCCATCCTGAAGGAGAACTGGCTACAGCAAGGGCAGCAGCAGCAGCTGGTACAATCATGGTGCTTTCATTTTCCGCTACTAGTACTGTTGAGGAGGTTGCAGCAACTTGTGATGCTGTTCGTTTCTTTCAACTTTATGTGTATAAGAACAGGAGTATATCAGCTGTACTAGCACAACGTGCAGAACGTGCGGGCTACAAAGCTATCGTTCTTACAGCTGACACTCCCAAGCTTGGACGCCGCGAGGCAGACATAAGAAACAAACTTGTTGTGCCTACTTTAAAGAATCTTGAAGGCCTACTTTCAATCAATATGGATACGGAAAAGGGTTCAGGACTTGCATCGTATGCATCTCAAACTTTGGATAGTTCTTTTAGTTGGAAGGATATAAAATGGTTGCAATCACTTACAAGTTTGCCAATTTTGATCAAGGGAATACTAACAGCTGAAGATGCTGAATTGGCCATACAAGCTGGCTTTGCTGGAATCATTGTTTCAAATCACGGTGCTCGTCAACTTGATTTTGTGTCATCAACGATTGTTGCTCTTGAAGAGGTTACTAAAGCTGTACGAGGAAGAGTCCCTGTACTATTTGATGGCGGGATCCGTCGTGGTACAGATGTCTTTAAAGCATTGGCTATTGGGGCACAGGCAGTTCTGGTTGGAAGGCCAATAATCTATGGTCTAGCAGTGAAAGGGGAATCTGGTGTTAAAAAAGTGCTGGAGATGCTCCAGGACGAGCTTGAACTTGCTATGTCTCTTAGTGGTTGTTGTCGAGTGGAGGAAATCACTAGATCCCATGTTCAAACTGAGAATGAAATCATACGCTCAATGTTATGA___TAAAGACTACTGCATATTACATCAAGACATACACGATCTGTAGGCATCAGGTAGCCATATTTTTCATGAGTACTTATTAGGATGTCAATTTGAATGTATTAGAAAGGCAAACATTTCCAATGTTGTAATTGGAATTTGATATTAATATTCTATTTATCAAACTTATGAAAAAACACATATTTGGAAATGCAAGATACAGATATTTAATACTTGCAGCAACGTAACCAATTATTTTTATCTTTATGTTCCACTGGATTTTTTATTTAAGTATTTTATTGAAATAATTTCACCC

Fln Alignment:

sp_v1.1_unigene3276___MAAEPVNVNEFSTLARNVLPKMIYDFYAGGAEDEWTLRENVAAFQRTRLRPRVLVDVSNVDLSTTILGFKISAPIMIAPTAMHKLAHPEGELXXXXXXXXXGTIMVLSFSATSTVEEVAATCDAVRFFQLYVYKNRSISAVLAQRAERAGYKAIVLTADTPKLGRREADIRNKLVVPTLKNLEGLLSINMDTEKGSGLASYASQTLDSSFSWKDIKWLQSLTSLPILIKGILTAEDAELAIQAGFAGIIVSNHGARQLDFVSSTIVALEEVTKAVRGRVPVLFDGGIRRGTDVFKALAIGAQAVLVGRPIIYGLAVKGESGVKKVLEMLQDELELAMSLSGCCRVEEITRSHVQTENEIIRSML
F4MKM3______________MAAEPVNVNEFSTLARNVLPKMIYDFYAGGAEDEWTLRENVAAFQRTRLRPRVLVDVSNVDLSTTILGFKISAPIMIAPTAMHKLAHPEGVTATARAAAAAGTIMVLSFSATSTVEEVAATCDAVRFFQLYVYKNRSISAVLAQRAERAGYKAIVLTADTPKLGRREADIRNKLVVPTLKNLEGLLSINMDTEKGSGLASYASQTLDSSFSWKDIKWLQSLTSLPILIKGILTAEDAELAIQAGFAGIIVSNHGARQLILCHQRLWLIEEVTKAVRGRVPVLFDGGIRRGTDVFKALAIGAQAVLVGRPIIYGLAVKGESGVKKVLEMLQDELELAMSLSGCCRVEEITRSHVQTENEIIRSML

SNPs (tot: 13)

Position	A %	C %	G %	T %	Probability
303			75	25	0.996473
305		75	25		0.996473
306			25	75	0.996473
489	80			20	0.995493
514	83		16		0.994512
515			16	83	0.994512
858		11		88	0.923564
1660	14		85		0.993533
1661			14	85	0.993533
1667			14	85	0.993533
1669	14		85		0.993533
1670	14		85		0.993533
1710	66			33	0.997452

SSRs (tot: 1)

Start position	End position	Sequence	Length
732	745	GCA GCA GCA GCA GC	14

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain