SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene3260

Length: 1999 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene3260
CAGAATTCAGACCCTGCAATTAAATGAATGAATATTTCTTTAGACTTGAAAATTCGAAGTCCCTTTGTATTCATGGGTACATAAGTTCCTCGCTAACCTGCCAGATATTCTAGAACTTTCTTCCATGCAAACAAAACAGAATCTGCATATCAGACAATGCCGCCTACCCGTCGGATAGGGCGTTCGTCGCGGAGGGCCGTGGTGGGCAAACCAGTGGCAGCCGATGATGGATTAAATTAGCACGCACATTATCCCTGACCCAGAAACCCCAAAACAGCGCAGAATCCTTCCATTTAATTTATTCCATAATAAAAGAAACGGCGCCATTACCATTTTTTTTCCCATTCAAATATCAGCTTGCTACAGCTAACTGATGCAAGCAGTTTTGCGGTTTTAATTTTCATTTTGTTTTGGTTTTATTGGTGTTAAAATGGGGGAGGATTTGGCCGAAGCTCCGCCTCCGCCTCCGCCAAGTACAGAGACATTACAGACATTTCCCAACGAGCCCGAAAAATCCCGCCTTATACGCCTTCCCAGGATCAAATTTGACCACGATTGGAGAAAATACGCGGCCGTGAAGCTTTCCTCGGAGTTTGACAGCGAGGGGAATGCCTTCATCAACAAGATTTCGGCTAGGGTGTTCCACGGGATTGCGAAGATTAAAGCTTCGTTTCAGAGGAGTGGCAGTGGCGAGATCCAGTCCCCGCAGCTAGGTTTTGTGACGAAGTATTTATCGATTTTATATGATCATGAAGATCGCAATGCGCTTGTTACGGCTTCAGCCAATCTCTCGCAGCGACTTCAGCTCAAGCTACTTACTGATGTTAAGGCCCAACAAGGAGAATTAAAAGTGCTTACAAGCTTGGCTGATTCTAGGTATAAAGTTGAAGTATCATGTGATGTACCGAGAATTGGTGTGCCCAGGGCAGTTGTAACATTCCCCATTGGTGAAGTCAAATTGGAGGATATGATCCAAGATGAACGTAGAGTCTTGTCTATGAATGGATTTGTTGCAGGGAACCTTATGAAGGGGCTGTGCGTGGCAGAATACAATGATAACAATTTGAATCTGAAGTACAAGTACAAGGATGAAGAAATGACTATTACACCAAGCATATCTTTACCGTCAAATGAGCTATCCCTTGGATTCAAACGACAGTTTAATCCCTTGAATAAGTTGAGCTATTTTTATGATTTCAATTCCACTGCATGGAGTGCTGTCTACAAACATCAACCTATTGATGATTTCAAAGTAAAAGTAGGTTATGATTCTAAAGTTCGACTTGGATGGGCCTCAGCTTGGGTTGGCAAAGAGACTTTAGGTGCTAAAAAGGCACCAATGAAGGTCAAATTTCAGGTCATGTTGCAAGTTCCCCAAGACGATGTAAAATCATCTGCTGTGCTATTCAGGTTGAAAAAACGAATAGATTTATAATTGTTTCATCACATTCAAGTGGGTTGTTTCATCTGTAGTAGTGCCTTAATGGCATTCTTAACATCTCAGAATCAGTTTGTAATTTATTTTTGCGTGCAACGTTTTCTGCATCTACAGAAGACAAAAATATCCCTGCAGTCGGATATGTTTTTGGTCTGAAATAATACAGCAGCTTCACATCTCATCATGTTGTTTTTTCCTCAAATGTTTAGCAAAGTTGAGGGTTTCATTCACAACCTGTTGCTTAGTTGAGGGATTGTTTGGGTGGATTGTGTGGTACTTGTCATTTTGGCATGAGTGCACTACTGGCATTGAAACGTCTTATTCTGAGATGCTTCCAGGTTAAGATTGATTTTGAGGTTACATATCTTTGTTGTGTGTCTCTTTGATAATTTTTATTTGATGGTTGGCATTCTGGTACTAGTTGTTATAGAAAACACTAATCTGGAAAAGCACCATCAGGAGATTGGTGGTTTGCATCCCTCAAGAGGTTAATTACAAATTTGGCTACAATATTATGTAAAAAGACACCAAAAGAGAGGCAAAATTTAGAAGACTTGAACT

Ace file of the UniGene sp_v1.1_unigene3260

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Unassigned protein	-	-	-
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	85%
Blast2go	protein	-	-	70%

Source	GOs	Term	Type	Identity
Blast2go	cation transport	GO:0006812	Biological Process	70%
Blast2go	ion channel activity	GO:0005216	Molecular Function	70%
Blast2go	chloroplast inner membrane	GO:0009706	Cellular Component	70%
Blast2go	mitochondrion	GO:0005739	Cellular Component	70%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NMZ8

Fln msg:

Fln protein: MGEDLAEAPPPPPPSTETLQTFPNEPEKSRLIRLPRIKFDHDWRKYAAVKLSSEFDSEGNAFINKISARVFHGIAKIKASFQRSGSGEIQSPQLGFVTKYLSILYDHEDRNALVTASANLSQRLQLKLLTDVKAQQGELKVLTSLADSRYKVEVSCDVPRIGVPRAVVTFPIGEVKLEDMIQDERRVLSMNGFVAGNLMKGLCVAEYNDNNLNLKYKYKDEEMTITPSISLPSNELSLGFKRQFNPLNKLSYFYDFNSTAWSAVYKHQPIDDFKVKVGYDSKVRLGWASAWVGKETLGAKKAPMKVKFQVMLQVPQDDVKSSAVLFRLKKRIDL*

Protein Length: 336

Fln nts: CAGAATTCAGACCCTGCAATTAAATGAATGAATATTTCTTTAGACTTGAAAATTCGAAGTCCCTTTGTATTCATGGGTACATAAGTTCCTCGCTAACCTGCCAGATATTCTAGAACTTTCTTCCATGCAAACAAAACAGAATCTGCATATCAGACAATGCCGCCTACCCGTCGGATAGGGCGTTCGTCGCGGAGGGCCGTGGTGGGCAAACCAGTGGCAGCCGATGATGGATTAAATTAGCACGCACATTATCCCTGACCCAGAAACCCCAAAACAGCGCAGAATCCTTCCATTTAATTTATTCCATAATAAAAGAAACGGCGCCATTACCATTTTTTTTCCCATTCAAATATCAGCTTGCTACAGCTAACTGATGCAAGCAGTTTTGCGGTTTTAATTTTCATTTTGTTTTGGTTTTATTGGTGTTAAA_-_ATGGGGGAGGATTTGGCCGAAGCTCCGCCTCCGCCTCCGCCAAGTACAGAGACATTACAGACATTTCCCAACGAGCCCGAAAAATCCCGCCTTATACGCCTTCCCAGGATCAAATTTGACCACGATTGGAGAAAATACGCGGCCGTGAAGCTTTCCTCGGAGTTTGACAGCGAGGGGAATGCCTTCATCAACAAGATTTCGGCTAGGGTGTTCCACGGGATTGCGAAGATTAAAGCTTCGTTTCAGAGGAGTGGCAGTGGCGAGATCCAGTCCCCGCAGCTAGGTTTTGTGACGAAGTATTTATCGATTTTATATGATCATGAAGATCGCAATGCGCTTGTTACGGCTTCAGCCAATCTCTCGCAGCGACTTCAGCTCAAGCTACTTACTGATGTTAAGGCCCAACAAGGAGAATTAAAAGTGCTTACAAGCTTGGCTGATTCTAGGTATAAAGTTGAAGTATCATGTGATGTACCGAGAATTGGTGTGCCCAGGGCAGTTGTAACATTCCCCATTGGTGAAGTCAAATTGGAGGATATGATCCAAGATGAACGTAGAGTCTTGTCTATGAATGGATTTGTTGCAGGGAACCTTATGAAGGGGCTGTGCGTGGCAGAATACAATGATAACAATTTGAATCTGAAGTACAAGTACAAGGATGAAGAAATGACTATTACACCAAGCATATCTTTACCGTCAAATGAGCTATCCCTTGGATTCAAACGACAGTTTAATCCCTTGAATAAGTTGAGCTATTTTTATGATTTCAATTCCACTGCATGGAGTGCTGTCTACAAACATCAACCTATTGATGATTTCAAAGTAAAAGTAGGTTATGATTCTAAAGTTCGACTTGGATGGGCCTCAGCTTGGGTTGGCAAAGAGACTTTAGGTGCTAAAAAGGCACCAATGAAGGTCAAATTTCAGGTCATGTTGCAAGTTCCCCAAGACGATGTAAAATCATCTGCTGTGCTATTCAGGTTGAAAAAACGAATAGATTTATAA___TTGTTTCATCACATTCAAGTGGGTTGTTTCATCTGTAGTAGTGCCTTAATGGCATTCTTAACATCTCAGAATCAGTTTGTAATTTATTTTTGCGTGCAACGTTTTCTGCATCTACAGAAGACAAAAATATCCCTGCAGTCGGATATGTTTTTGGTCTGAAATAATACAGCAGCTTCACATCTCATCATGTTGTTTTTTCCTCAAATGTTTAGCAAAGTTGAGGGTTTCATTCACAACCTGTTGCTTAGTTGAGGGATTGTTTGGGTGGATTGTGTGGTACTTGTCATTTTGGCATGAGTGCACTACTGGCATTGAAACGTCTTATTCTGAGATGCTTCCAGGTTAAGATTGATTTTGAGGTTACATATCTTTGTTGTGTGTCTCTTTGATAATTTTTATTTGATGGTTGGCATTCTGGTACTAGTTGTTATAGAAAACACTAATCTGGAAAAGCACCATCAGGAGATTGGTGGTTTGCATCCCTCAAGAGGTTAATTACAAATTTGGCTACAATATTATGTAAAAAGACACCAAAAGAGAGGCAAAATTTAGAAGACTTGAACT

Fln Alignment:

sp_v1.1_unigene3260___MGEDLAEAXXXXXXSTETLQTFPNEPEKSRLIRLPRIKFDHDWRKYAAVKLSSEFDSEGNAFINKISARVFHGIAKIKASFQRSGSGEIQSPQLGFVTKYLSILYDHEDRNALVTASANLSQRLQLKLLTDVKAQQGELKVLTSLADSRYKVEVSCDVPRIGVPRAVVTFPIGEVKLEDMIQDERRVLSMNGFVAGNLMKGLCVAEXXXXXXXXXXXXXXEEMTITPSISLPSNELSLGFKRQFNPLNKLSYFYDFNSTAWSAVYKHQPIDDFKVKVGYDSKVRLGWASAWVGKETLGAKKAPMKVKFQVMLQVPQDDVKSSAVLFRLKKRIDL
A9NMZ8______________MGEDLVEAPPSPPPNAEPLQTFSNESKKSRFISLPRIKFDGDWRKYAAVKVSSEFDSEGSVFFNKISARVFDGIAKIKGSFQRSGSGEIRSPQLGFVTKYLSVLYDHEDRNTLVTASADLPKRLQLKLVTDVQAQQGELKLLTSLADPRYRAELSCDVPSIGLPRAVVTFPNGEVKLEDEIQDQRRVLSINGFVAGKFMNGLCMAGYNDNNVNLKYKYKDEEMTIVPSISFPSKELSLGFKRQFNPLNKLSYFYDFNSTAWSAVYKHQPIDDFKVKVGYDSKVRLGWASAWVGKENLGAKKAPMKVKFQVMLQVPQDDVKSSAVLFRVKKRVDL

SNPs (tot: 30)

Position	A %	C %	G %	T %	Probability
172	40			60	1.0
173		80		20	0.995493
176	60		40		1.0
177			20	80	0.995493
181		20	80		0.995493
254	20	80			0.995493
414		33		66	0.997452
475	75		25		0.996473
529	33	66			0.997452
759		10		90	0.999898
1121	12	87			0.992554
1122	14			85	0.993533
1125	16		83		0.994512
1126	16	83			0.994512
1128		16	83		0.994512
1130		83		16	0.994512
1131	83		16		0.994512
1132	83		16		0.994512
1133	83	16			0.994512
1136	85	14			0.993533
1137	14		85		0.993533
1144	12	87			0.992554
1146			12	87	0.992554
1290	88	11			0.999952
1293			88	11	0.999952
1294		11	88		0.999952
1295	11	88			0.999952
1483	14			85	0.999981
1766	10		90		0.90298
1799		25		75	0.996473

SSRs (tot: 1)

Start position	End position	Sequence	Length
453	471	CTCCGC CTCCGC CTCCGC C	19

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain