SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene3257

Length: 1806 nt

Origin of reads: Biogeco_1 Uagpf Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v1.1_unigene3257 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	r2r3-myb transcription factor, putative	-	-	2.0e-31	30%
FL-Next	sp=Transcription factor GAMYB; Oryza sativa subsp. japonica (Rice).	-	-	0.0	30%
Blast2go	r2r3-myb transcription	-	-	7.8775e-32	47%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: sp_plants

Fln subject: Q0JIC2

Fln msg: your sequence is shorter than subject: 427 - 553

Fln protein: YPPDVQLQNSNQKAPQTPSEPNHIDLPYESRPSNNPLIFSSKVENGTPSYDGLKDANTNPMPFSGLGNVSMGPVFYQANPIQRLKRLRDSSFIMGPPSSPFGRMGVNGHMGMNDVSKSLQPGFKARFPYPLQAARSDSFVAQGCFSYDQNLSSTSNLPLGGFSSGSHAVMNGTFSTSRLFSGQKLELPSSQFAESVQTAGSSINPVLNRSTPLLLPPVPAQTINQVDYSFPMPKNSGLLESMFQEAQTMCGVKAHSSSNSSIDLQGGSKSSISNPLDNGFPMQIKIKHGDNSDPNTPLDGHTFSMFSESTPPLGTSPWDDSSSAPSPIGKAMKSEEPNEGYISSGSCGDENVSSMLDLTADVLPDTDWNAQISGIEKDQSLLNDALTTMFNDDLGMGVQQMPSETSPSNQTWGLGSCPWSNMPGVC*

Protein Length: 428

Fln nts: TGTATCCGCCAGATGTACAGCTCCAGAATTCAAATCAAAAGGCCCCACAAACACCGTCTGAGCCTAATCATATAGATTTACCATATGAGAGTCGCCCTTCAAATAACCCCTTGATCTTCAGCTCTAAGGTTGAAAATGGTACTCCTAGCTATGATGGTCTGAAGGATGCTAATACGAATCCTATGCCATTTTCTGGGTTGGGTAATGTTTCCATGGGCCCTGTGTTTTATCAAGCAAATCCAATCCAGCGTCTCAAGAGACTTAGGGACTCTAGTTTCATCATGGGACCCCCTTCCAGCCCTTTCGGTCGCATGGGGGTGAATGGTCACATGGGGATGAATGATGTCAGTAAGAGCTTGCAGCCTGGTTTTAAGGCCAGATTTCCTTACCCCCTCCAAGCTGCTAGATCGGATTCATTCGTTGCTCAAGGCTGCTTTTCCTATGACCAGAATCTCAGCAGCACTAGTAATTTGCCTCTGGGAGGGTTTTCATCAGGCAGCCATGCCGTTATGAATGGTACTTTCTCTACTTCTAGGCTTTTTTCCGGCCAGAAGCTGGAGCTCCCTTCAAGCCAATTTGCTGAGTCTGTGCAGACTGCAGGCTCAAGCATCAATCCAGTTTTAAATAGGAGCACTCCTCTTTTGCTGCCGCCCGTTCCTGCTCAGACGATCAATCAAGTAGACTACAGCTTCCCTATGCCAAAAAATAGTGGGTTGTTAGAATCTATGTTCCAAGAAGCTCAAACAATGTGTGGGGTTAAGGCTCATTCCTCCTCAAATTCCTCGATTGACCTGCAGGGGGGCTCCAAAAGCAGTATCAGTAACCCACTGGATAATGGGTTTCCTATGCAGATCAAGATAAAGCATGGCGATAACAGTGACCCAAATACTCCCTTGGATGGTCATACTTTCTCCATGTTTAGCGAAAGCACTCCTCCTTTGGGTACTAGTCCATGGGATGATTCGTCATCCGCACCGTCACCAATTGGAAAGGCCATGAAGTCAGAAGAGCCAAATGAGGGGTATATTTCTAGTGGTAGCTGTGGAGATGAAAACGTTTCTTCAATGTTGGATTTAACAGCAGATGTATTGCCGGATACAGATTGGAATGCTCAAATTTCTGGAATAGAGAAAGACCAATCCCTTCTTAATGATGCCCTGACTACCATGTTCAATGATGATTTGGGCATGGGTGTTCAACAGATGCCATCTGAAACTTCACCTTCCAATCAAACATGGGGACTTGGTTCCTGCCCTTGGAGTAATATGCCTGGTGTTTGTTAA___GCAGCAAATCTTCATTGACTGTTCAAGTACGATGGTAGCAAAATGACATTTTATTGAGAAGTCATACTAAAGTAGTGTGCAAATATGGGTTAGTATTTTGTGATTTTTGATGAATGGTGGAAGTTTTGATGGACAGTTAGAGCTCTTTGGAGGGCCAACTACCAATCGTGCTTCGATGAGCATAGGGAATTAAGGATAGGTTTCGAATACTATGCATATTTATGGTGTTCTAGTGTTTTACTCATGTGGTGCAAGTAGGCTGAGTTAGCAGAAATGCATATTATGTAGGAAGTTTGGTTTAGATATATTGTGACTAGGTAGCTAATGTGAACTTAAGCGGTGGTAAATTCTAGTCAAATTTGAAGGTTGTGACTACCTCAAACTTATCTGGGGATAGATATCCTACCATTCGTGCTTTAAGGAATTTGTATGGCTATATTTTTAAGTGGCCACTCTTTCAAAGCTGATATAACAGACTTTGACATTTGATATATTATGCTTGAGTTTTTGGCTGTTTGCCTAT

Fln Alignment:

sp_v1.1_unigene3257___FSYDQNLSSTSNL--PLGGFSSGSHAVMNGTFSTSRLFSGQ-KLELPSSQFAESVQTA--GSSINPVLNRSTPLLLPPV--PAQTINQVDYSFPMPKNSGLLESMFQEAQTMCGVKAHSSSNSSIDLQGGSKSSISNP-----LDNGFPMQIKIKHGDNSDP----NTPLDGHTFSMFSESTPPLGTXXXXXXXXXXXPIGKAMKSEEPNEGYISSGSCGDENVSSMLDLTADVLPDTD---WNAQISGIEKDQSLLNDALTTMFNDDLGMGVQQMPSETSPSNQTWGLGSCPWSNMPGVC
Q0JIC2______________FDYLHEANSTSKIIAPFGGALNGSHAFLNGNFSASRPTSGPLKMELPSLQDTESDPNSWLKYTVAPAL-QPTELVDPYLQSPAAT-PSVKSECASPRNSGLLEELIHEAQTLRSGKNQQTSVIS------SSSSVGTPCNTTVLSPEFDMCQEYWEEQHPGPFLNDCAPFSGNS---FTESTPPVSA-----ASPDIFQLSKVSPAQSTSMG-------SGEQVMGPKYEPGDTSPHPENFRPDALFSGNTADPSVFNNAIAMLLGNDLSIDCRPVLGDGIMFN------SSSWSNMPHAC

SNPs (tot: 12)

Position	A %	C %	G %	T %	Probability
1403		80		20	0.995493
1611			25	75	0.996473
1615		75	25		0.996473
1616	25	75			0.996473
1619	75		25		0.996473
1622	33	66			0.997452
1625	66		33		0.997452
1626	66			33	0.997452
1627	66	33			0.997452
1629		33		66	0.997452
1631	33		66		0.997452
1633	66		33		0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain