SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene3248

Length: 2603 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf

UniGene Fasta

>sp_v1.1_unigene3248
ATGGGGATCCATGGCCTGAGAATTGAGAGGAGAGTTTTTTATTTTTCGCTGTTAATCCCCGCAAATGGCGATTGGGGTAGTAGTAACAGGATTTGTGTGAAAGTCGTTTTTTAACTGAGAATTTGTTTGTGAAGCAATAGACTTTGGTTGGGTGGATTCAGTTAATATAAGGATGCAATCTGGTCATGCGCAATAACCGGGGCTTCCAGGGATCCAGCAATTTGTGGTTGAAGGCTGCTCTAGTCCTCATGGCTTGTTTGCAGCTCTTTCACAGGAACAAATTAATCATAATACCAATCACCCTCTACAGACCCGTCAGGCTATTCAGCAGGCTGGCTTTCAAAATCAGAAGGTCCTGCAACAGCACCAGCTTGGGTTGCAGGGACCAGAATCCTCCGATGCTTCTCTTCATTCTCGTGACAAGGCTTACGCTAGCAGCCTGAGAGAAACTACAGCTCTCGGTCATGTGCAAGGACGGGATCAGGTGCCCCCGCAGCCCCTTACAGATGACGATGGGGGCGGAGACGAGGGTGAAAGAGGTGGCGGGGGTGTTAACAGATGGCCTCGTGAAGAGACACTGGCGCTCCTGAGGATCCGCTCTGGGTTGGACACCAATTTCAGAGACTCGAATATCAAAGGGCCGCTCTGGGAAAACGTCTCACGGAAGCTTGGCGAGCTTGGGTATTACAGAAGCGCGAAGAAATGCAAGGAAAAGTTTGAAAATATCAGCAAATATTATAAAAAAACCAAGGATGGAAAAATCGGAAGGCAGGATGGTAAGAGTTATAGGTTTTTCAGTGAGCTTGAAGCTCTTTATGGCAACAGCCATGGCGGTTCTCGTTTTGCCAATCGTACTACTGGCCAAGAAGTTACTAGGCATTGGAGGGCCTGAAAAAACCAGCAATGCAGCATCACTAAACTTGTCATCTGATAACACCTCAGAGGATGATCACTGTAATAATACCCCGCTGCAAAACCCTAGCCCTCCCAAAACTCTTGAACAGGTTAACAGGAAGAAGAGAAAGAGGAAGCATTTGGCATCGATAACAGCGTTCTTCGAGAGCTTGGTCAAGCAGGTAATGGGGCATCAGGAAGAACTGCACAGAAAATTCCTAGAAGCAATAGATCGCCGAGAGCAAGAGAGATTGAAAAGAGAAGAAACCTGGAAGCGTCAGGAAATGGCCCGTTTAAACAGAGAAACTGAACTTCGTGCACAGGAGCATGCCCTTGCATCGAGTCGTGAAGCAGCCATTGTTGCATTTCTGCAGAAAATCACAGGGCAGAATCTGAATCTCCCCACTTCAGTCCCACCACCCTCGGTACCAACTGAACCACCAACTGAAACACAACAAGACCAGGACAAATTAGCCACTGATACAGCTATGCCGGACCCTAACTGCAAAAGGTGGCCTAAGCCTGAAGTACAGTCCTTGATAAGGCTACGGAGTAACATGGATGTCAGATTTCGAGAGGCAGGATTCAAAGGACCGCTGTGGGAAGAAATTTCTTCTGGAATGGCTAGCCTTGGATTCCAGAGAAGTGCTAAGAGATGCAAAGAAAAGTGGGAGAATATCAACAAATATTTCAGGAAGACCAAGGATAACATTAAAAAACGCCCCCAAAATGCCAAGACACTCGTCCTTACTTTCATCAGCTTAACCTTCTATATAGTGATAATCCTAAGTCGAGCAAGACAGATCAATCTCATTCCTCTGATGATCAAGCTGATCCAGACCATGAGAACATCAATGATAATAATAATGGAGAAGATGATGAACATGCTCAAACTAGGCCATCTGATCATTCAGAACTTCTAGCAGCTATGATCCATGGAGATCAGGCAGGGCAAACATCCTTGGCAAAAACCAATGCTGCAACTACTACTGTGCACGACCATTTCTTCCGAGATGACCATCCTGTTGATCAAGTACAGAAACGCTTCAAAACAAGACAGCATCTGCCTACTGGAATCCAAGCCTCAAATGCAATGGGCATCATCACTGAAAGTGGATCCAAACCCAATGCCTTTGAAGACACATTCTCAGGCAATATTAAAAAGGGCAGCACAATGGACAGTCTGGTAAAAGAAATGCTAGAGATGCAGCAGCAGAAATTTCTTGATGCTTTTGAGAGGAGAGAACATGAACAAGAACAACAGCAAAGCATGAGTAGTGAAGAGAGACATCACCACCACCACCCACAAGAAACAACACAGGATGATCGTTCACAGTCTGCTCTGATGGCTTTGGTGCATAAACTCACTGTGAATGCTGCGGATTATGCAACGGGTTGAATATTTGAATGTACAGGACTCCTTCCTATGTACCATATGTGTTCTCTTATGTGCTATTAGGTTGCCATCGGAAGTATGTTCAGTGTATGAAGGCGGATCAACTCACAAGGTGAGTCTCGGTAGGCTAAAGCAAAGTGCACTTCATATATTATGTAGTTGTTTGTTCAGTTTAAAATTTCCATCAGCGAGAGTCAAATCCTTTTGGCCTGCTGCATAATTTTTATCAGTTAAATTCTTTGAGACCATAGATATTTAATTATACTGAACTGTATAGTTGTAACTTTATCTATGCAATAATGAAAGGGTATTT

Ace file of the UniGene sp_v1.1_unigene3248

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Unassigned protein	-	-	-
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	32%
Blast2go	protein	-	-	64%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Myb-like domain	IPR017877	-	0.0	64%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NRE1

Fln msg: Unexpected stop codon in the beginning of your sequence, your sequence is shorter than subject: 297 - 378

Fln protein: WGSMA*ELRGEFFIFRC*SPQMAIGVVVTGFV*KSFFN*EFVCEAIDFGWVDSVNIRMQSGHAQ*PGLPGIQQFVVEGCSSPHGLFAALSQEQINHNTNHPLQTRQAIQQAGFQNQKVLQQHQLGLQGPESSDASLHSRDKAYASSLRETTALGHVQGRDQVPPQPLTDDDGGGDEGERGGGGVNRWPREETLALLRIRSGLDTNFRDSNIKGPLWENVSRKLGELGYYRSAKKCKEKFENISKYYKKTKDGKIGRQDGKSYRFFSELEALYGNSHGGSRFANRTTGQEVTRHWRA*

Protein Length: 298

Fln nts: ATGGGGATCCATGGCCTGAGAATTGAGAGGAGAGTTTTTTATTTTTCGCTGTTAATCCCCGCAAATGGCGATTGGGGTAGTAGTAACAGGATTTGTGTGAAAGTCGTTTTTTAACTGAGAATTTGTTTGTGAAGCAATAGACTTTGGTTGGGTGGATTCAGTTAATATAAGGATGCAATCTGGTCATGCGCAATAACCGGGGCTTCCAGGGATCCAGCAATTTGTGGTTGAAGGCTGCTCTAGTCCTCATGGCTTGTTTGCAGCTCTTTCACAGGAACAAATTAATCATAATACCAATCACCCTCTACAGACCCGTCAGGCTATTCAGCAGGCTGGCTTTCAAAATCAGAAGGTCCTGCAACAGCACCAGCTTGGGTTGCAGGGACCAGAATCCTCCGATGCTTCTCTTCATTCTCGTGACAAGGCTTACGCTAGCAGCCTGAGAGAAACTACAGCTCTCGGTCATGTGCAAGGACGGGATCAGGTGCCCCCGCAGCCCCTTACAGATGACGATGGGGGCGGAGACGAGGGTGAAAGAGGTGGCGGGGGTGTTAACAGATGGCCTCGTGAAGAGACACTGGCGCTCCTGAGGATCCGCTCTGGGTTGGACACCAATTTCAGAGACTCGAATATCAAAGGGCCGCTCTGGGAAAACGTCTCACGGAAGCTTGGCGAGCTTGGGTATTACAGAAGCGCGAAGAAATGCAAGGAAAAGTTTGAAAATATCAGCAAATATTATAAAAAAACCAAGGATGGAAAAATCGGAAGGCAGGATGGTAAGAGTTATAGGTTTTTCAGTGAGCTTGAAGCTCTTTATGGCAACAGCCATGGCGGTTCTCGTTTTGCCAATCGTACTACTGGCCAAGAAGTTACTAGGCATTGGAGGGCCTGA___AAAAACCAGCAATGCAGCATCACTAAACTTGTCATCTGATAACACCTCAGAGGATGATCACTGTAATAATACCCCGCTGCAAAACCCTAGCCCTCCCAAAACTCTTGAACAGGTTAACAGGAAGAAGAGAAAGAGGAAGCATTTGGCATCGATAACAGCGTTCTTCGAGAGCTTGGTCAAGCAGGTAATGGGGCATCAGGAAGAACTGCACAGAAAATTCCTAGAAGCAATAGATCGCCGAGAGCAAGAGAGATTGAAAAGAGAAGAAACCTGGAAGCGTCAGGAAATGGCCCGTTTAAACAGAGAAACTGAACTTCGTGCACAGGAGCATGCCCTTGCATCGAGTCGTGAAGCAGCCATTGTTGCATTTCTGCAGAAAATCACAGGGCAGAATCTGAATCTCCCCACTTCAGTCCCACCACCCTCGGTACCAACTGAACCACCAACTGAAACACAACAAGACCAGGACAAATTAGCCACTGATACAGCTATGCCGGACCCTAACTGCAAAAGGTGGCCTAAGCCTGAAGTACAGTCCTTGATAAGGCTACGGAGTAACATGGATGTCAGATTTCGAGAGGCAGGATTCAAAGGACCGCTGTGGGAAGAAATTTCTTCTGGAATGGCTAGCCTTGGATTCCAGAGAAGTGCTAAGAGATGCAAAGAAAAGTGGGAGAATATCAACAAATATTTCAGGAAGACCAAGGATAACATTAAAAAACGCCCCCAAAATGCCAAGACACTCGTCCTTACTTTCATCAGCTTAACCTTCTATATAGTGATAATCCTAAGTCGAGCAAGACAGATCAATCTCATTCCTCTGATGATCAAGCTGATCCAGACCATGAGAACATCAATGATAATAATAATGGAGAAGATGATGAACATGCTCAAACTAGGCCATCTGATCATTCAGAACTTCTAGCAGCTATGATCCATGGAGATCAGGCAGGGCAAACATCCTTGGCAAAAACCAATGCTGCAACTACTACTGTGCACGACCATTTCTTCCGAGATGACCATCCTGTTGATCAAGTACAGAAACGCTTCAAAACAAGACAGCATCTGCCTACTGGAATCCAAGCCTCAAATGCAATGGGCATCATCACTGAAAGTGGATCCAAACCCAATGCCTTTGAAGACACATTCTCAGGCAATATTAAAAAGGGCAGCACAATGGACAGTCTGGTAAAAGAAATGCTAGAGATGCAGCAGCAGAAATTTCTTGATGCTTTTGAGAGGAGAGAACATGAACAAGAACAACAGCAAAGCATGAGTAGTGAAGAGAGACATCACCACCACCACCCACAAGAAACAACACAGGATGATCGTTCACAGTCTGCTCTGATGGCTTTGGTGCATAAACTCACTGTGAATGCTGCGGATTATGCAACGGGTTGAATATTTGAATGTACAGGACTCCTTCCTATGTACCATATGTGTTCTCTTATGTGCTATTAGGTTGCCATCGGAAGTATGTTCAGTGTATGAAGGCGGATCAACTCACAAGGTGAGTCTCGGTAGGCTAAAGCAAAGTGCACTTCATATATTATGTAGTTGTTTGTTCAGTTTAAAATTTCCATCAGCGAGAGTCAAATCCTTTTGGCCTGCTGCATAATTTTTATCAGTTAAATTCTTTGAGACCATAGATATTTAATTATACTGAACTGTATAGTTGTAACTTTATCTATGCAATAATGAAAGGGTATTT

Fln Alignment:

sp_v1.1_unigene3248___WPREETLALLRIRSGLDTNFRDSNIKGPLWENVSRKLGELGYYRSAKKCKEKFENISKYYKKTKDGKIGRQDGKSYRFFSELEALYG
A9NRE1______________WKRAEVLRLIKFRAEMESRFAKSARRAALWEELAELLGAEGIKRDGKQCREKWDKLMAEFKDVSDGKRDRSESP---YYAELTATVG

SNPs (tot: 70)

Position	A %	C %	G %	T %	Probability
472	90		10		0.90298
488	42		57		1.0
509		33		66	0.997452
588	33	66			0.997452
592	66		33		0.997452
690	33			66	0.997452
692	66		33		0.997452
693		66	33		0.997452
694	66		33		0.997452
702		33	66		1.0
913	77			22	0.999999
1089	90	10			0.90298
1090	90		10		0.90298
1093			90	10	0.90298
1095	10		90		0.90298
1097	90	10			0.90298
1100	90			10	0.90298
1103	90	10			0.90298
1104	40		50	10	1.0
1107	90	10			0.90298
1364	90			10	0.90298
1365		90	10		0.90298
1366	90		10		0.90298
1367	90		10		0.90298
1460		50	50		1.0
1502	40		60		1.0
1533	25		75		0.996473
1709	81		18		0.999994
1711	81			18	0.999994
1717	81	18			0.999994
1874	20		80		0.995493
1906		25		75	0.996473
2001	75		25		0.996473
2027	75			25	0.996473
2064	75	25			0.996473
2065	75		25		0.996473
2067	75	25			0.996473
2068			25	75	0.996473
2070	75		25		0.996473
2072	75	25			0.996473
2073	75	25			0.996473
2074	75			25	0.996473
2075			75	25	0.996473
2079	75			25	0.996473
2082	75			25	0.996473
2085	75	25			0.996473
2088		25	75		0.996473
2100	75	25			0.996473
2102	75			25	0.996473
2103			75	25	0.996473
2105	75	25			0.996473
2109		75	25		0.996473
2110	25			75	0.996473
2112			75	25	0.996473
2116		25		75	0.996473
2118		75		25	0.996473
2119	75		25		0.996473
2120	25		75		0.996473
2126			75	25	0.996473
2188	20		80		0.995493
2192	80		20		0.995493
2235		16	83		0.994512
2236	83		16		0.994512
2241	16			83	0.994512
2243	83	16			0.994512
2244		83		16	0.994512
2245	83			16	0.994512
2247			16	83	0.994512
2252	16			83	0.994512
2255		16	83		0.994512

SSRs (tot: 1)

Start position	End position	Sequence	Length
2186	2198	CAC CAC CAC CAC C	13

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain