SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene3224

Length: 2658 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene3224
CGTCGCAAACAAGAGTGTCAATTTAGATTGGCAACCATTGTCGCTGGATCGGCCCGCCATTAAATTCTGTTAACACCGAGAGCGTGTGCTATCGGTGGGCTGATCTCAATGGCTGTGAAGGCGAGCGTGTCGAGGTTCCCATGCGAGGCAGAAGTACAGGAGAAGGGTGGTCTGCCATGGGGGATCTCAGTCACTCCATTCGCTGCCGCGGACGAAACGGGCACCCACCCCGTCTATGGCACCGATGGAGACCTCCTTCCCCGCTGCGAGAACTGCTGGGCCTACTTCAACGCCCTCTGCGAGATGGAACAGTGGGCATGGAACTGTGCCCTTTGCGGCACCCTCAACGGCCTTTCCGCTCAGATGGCTGCTCGCTATTCCCTTCCTCAATCCTGCCCCGAGCTGTCCTCCTCCTTCGTCGATTTGGAACTCCAAGATGATGGATCAGGAGACGAGGAGATGCGGGCTCGTCCGGTCTATGTTGCTGCAGTTGACTTGTCAGCTTCTGAAGAGTTTCTGGAGCTTGTGAAGAGTGCACTGCTTGCAGCATTAGAAGCTCTAGGACCAGGATCATTGTTTGGACTGATTACCTTTAGCCACAAGATAGGCTTGTATGATGTCCAGGGACCTGTTCCAGTTGTGAAGCACATTTTCATTCCTCCAGACATTGATGGACGAGTACCTATAGAATTGGAAGATGCAATGCCTTTGCTGTCTTTTTTAGCTCCTGTCGAGAATTACAAAGACTGCATTGCAGCAGCATTAGAAACATTAAGGCCAACAACCTCTTGGGAAAGAACTACAGCTGCAGGACAAGGAATGGATGGTGTTCTTTTGGGTGGAAGAGGATTTGGAGTGGCAATGGATGCTCTTATCAGTTATCTTGGATCAGAGTATGGAAATACATTTGCATTAGCAAGGGTTTTTTCTTTCTTATCTGGCCCCCCTGACTACGGAGCTGGACAGTTGGATACCAGACGCTATGGTGAGCAATATGCCAGCAAGGGTGAAGATGCAGACCGTGCATTGCTTCCAGAACAGACTCCATTTTACAAGGATCTGGCTGCTGTGGCTGTTCAAGCAGGTGTCTGCATTGATATATTTACTGTTACAAATGAATACACAGACTTGGCTTCACTCAAGTTTTTGAGCATTGAAAGTGGTGGTTCGTTGTTTTTATATTCAAGCACTGATGATTCAACACTTCCTCAGGATTTATATCGAATGTTGAGTCGTCCATATGCTTTTGCTTGTGTATTGAGGCTCAGAACATCGCCTGAATTCAGACCTGGTCGTTCACATGGTCACTTTTTCCCAGATCCACAATATGAGAATGTGCAACATATCATCTGTTGTGATACGTATGCCACTTATGCCTATGATTTTGAGTTCGAGAACAGCAATGGCTTTAGCAGGAACTCAGATGCTCCCCCTGTTTTGCAATTTGCATTTCAATATACAATCATTGTACCGCCTGAAGAAAATGTCAAGAAAGGATCTATTTCCCTAGACAGGCCAAAGTATTCACTTAAACGGAGATTGAGAATACGCACACTGCAGTATGGAATAGCGAGAAATATCAATGAACTGTATGACAGTGCTGATGCAGAAGTTATACTTTCTAACCTAGTTCACAAGGTAATTTCAGCTTCCTTGGAGCAAGGTGTGAAGGAGGGCAGATTGTTACTGCATGACTGGCTTGTCATTCTCACAGCTCAATACAATGATGCCTATAAGATTGTTGAATTTGGGAAGCCTGGTACCACTGGTCCGCTTGATGTTGCATTTTCACATTGCCCACAGTTGCAACCATTACCAAGACTTATATTTGCGCTACTGAGGAGTCCACTTCTCCGTCTTCATGAAGAGGGTATACACCCAGACTATCGAATTTATCTTCAGTGCCTTTTCAGTGCTCTGGAGCCAAGCTCCCTCCTACGAGCTGTATATCCAGTATTGTCCTCATATTCAACTCCAGATAAGCAGGCATATCCTCGTCATTCGTTAAGCCGGGCAGCGCTCATAACCAGTGGCAGTCCTATTTTCTTTCTTGATGCATTTACTACTCTCATTGTTTATTATTCTTCAACAGCAGATCCTGCATTGCCGTTTCCTCCTCCACAGAACTGTCTTTTACGAGCTATAATTAACAAGCTGAAGCAAGAAAGAAGTATCACACCCAAACTTCTTTTGATTCGTAGCGGCCATGATAATGCTTATCCCTTTGAGCAGTATCTTATTGAGGAACAGGATGTTGATGGAATAGGATTGAGTAATGGGATGGGTTTTGTTTCTTTTCTTGATCAAATTAGCCGAGATGTTCTGGAATATATGAAATGAGCAGGTGAGTACTATACAATCATTGCATCTATGGATGAGGGATTGTTTCCATCAATAAGGTTTAGGGCATTCAGAGGCATAGAAATGCTAACCATGCAAGTGTTTGAGATTTATGTGTTAATCTTAGGATGTAATCTCATAAGCCTTGCATTCTGGAATTGCACTTGCCAGTTTTGTTCTAGGCAAAAGGTCTGCAGAATAATATCAGCGTTAAATTTGTAAATCCATAGATTATCTCCAGACTCCAAGGATAATGAGTTATTGTCATTTGTTGAGTATAATAGAACTAATAATGAGCATTGCTTTTGATTAAAATCC

Ace file of the UniGene sp_v1.1_unigene3224

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	sec23/sec24 transport family protein	-	-	71%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	95%
Blast2go	protein	-	-	81%

Source	InterPros	Term	Type	Identity
Blast2go	Zinc finger, Sec23/Sec24-type	IPR006895	-	81%
Blast2go	Sec23/Sec24, trunk domain	IPR006896	-	81%
Blast2go	Sec23/Sec24, helical domain	IPR006900	-	81%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5AD51

Fln msg: your sequence is longer than subject: 744 - 369

Fln protein: MAVKASVSRFPCEAEVQEKGGLPWGISVTPFAAADETGTHPVYGTDGDLLPRCENCWAYFNALCEMEQWAWNCALCGTLNGLSAQMAARYSLPQSCPELSSSFVDLELQDDGSGDEEMRARPVYVAAVDLSASEEFLELVKSALLAALEALGPGSLFGLITFSHKIGLYDVQGPVPVVKHIFIPPDIDGRVPIELEDAMPLLSFLAPVENYKDCIAAALETLRPTTSWERTTAAGQGMDGVLLGGRGFGVAMDALISYLGSEYGNTFALARVFSFLSGPPDYGAGQLDTRRYGEQYASKGEDADRALLPEQTPFYKDLAAVAVQAGVCIDIFTVTNEYTDLASLKFLSIESGGSLFLYSSTDDSTLPQDLYRMLSRPYAFACVLRLRTSPEFRPGRSHGHFFPDPQYENVQHIICCDTYATYAYDFEFENSNGFSRNSDAPPVLQFAFQYTIIVPPEENVKKGSISLDRPKYSLKRRLRIRTLQYGIARNINELYDSADAEVILSNLVHKVISASLEQGVKEGRLLLHDWLVILTAQYNDAYKIVEFGKPGTTGPLDVAFSHCPQLQPLPRLIFALLRSPLLRLHEEGIHPDYRIYLQCLFSALEPSSLLRAVYPVLSSYSTPDKQAYPRHSLSRAALITSGSPIFFLDAFTTLIVYYSSTADPALPFPPPQNCLLRAIINKLKQERSITPKLLLIRSGHDNAYPFEQYLIEEQDVDGIGLSNGMGFVSFLDQISRDVLEYMK*

Protein Length: 745

Fln nts: CGTCGCAAACAAGAGTGTCAATTTAGATTGGCAACCATTGTCGCTGGATCGGCCCGCCATTAAATTCTGTTAACACCGAGAGCGTGTGCTATCGGTGGGCTGATCTCA_-_ATGGCTGTGAAGGCGAGCGTGTCGAGGTTCCCATGCGAGGCAGAAGTACAGGAGAAGGGTGGTCTGCCATGGGGGATCTCAGTCACTCCATTCGCTGCCGCGGACGAAACGGGCACCCACCCCGTCTATGGCACCGATGGAGACCTCCTTCCCCGCTGCGAGAACTGCTGGGCCTACTTCAACGCCCTCTGCGAGATGGAACAGTGGGCATGGAACTGTGCCCTTTGCGGCACCCTCAACGGCCTTTCCGCTCAGATGGCTGCTCGCTATTCCCTTCCTCAATCCTGCCCCGAGCTGTCCTCCTCCTTCGTCGATTTGGAACTCCAAGATGATGGATCAGGAGACGAGGAGATGCGGGCTCGTCCGGTCTATGTTGCTGCAGTTGACTTGTCAGCTTCTGAAGAGTTTCTGGAGCTTGTGAAGAGTGCACTGCTTGCAGCATTAGAAGCTCTAGGACCAGGATCATTGTTTGGACTGATTACCTTTAGCCACAAGATAGGCTTGTATGATGTCCAGGGACCTGTTCCAGTTGTGAAGCACATTTTCATTCCTCCAGACATTGATGGACGAGTACCTATAGAATTGGAAGATGCAATGCCTTTGCTGTCTTTTTTAGCTCCTGTCGAGAATTACAAAGACTGCATTGCAGCAGCATTAGAAACATTAAGGCCAACAACCTCTTGGGAAAGAACTACAGCTGCAGGACAAGGAATGGATGGTGTTCTTTTGGGTGGAAGAGGATTTGGAGTGGCAATGGATGCTCTTATCAGTTATCTTGGATCAGAGTATGGAAATACATTTGCATTAGCAAGGGTTTTTTCTTTCTTATCTGGCCCCCCTGACTACGGAGCTGGACAGTTGGATACCAGACGCTATGGTGAGCAATATGCCAGCAAGGGTGAAGATGCAGACCGTGCATTGCTTCCAGAACAGACTCCATTTTACAAGGATCTGGCTGCTGTGGCTGTTCAAGCAGGTGTCTGCATTGATATATTTACTGTTACAAATGAATACACAGACTTGGCTTCACTCAAGTTTTTGAGCATTGAAAGTGGTGGTTCGTTGTTTTTATATTCAAGCACTGATGATTCAACACTTCCTCAGGATTTATATCGAATGTTGAGTCGTCCATATGCTTTTGCTTGTGTATTGAGGCTCAGAACATCGCCTGAATTCAGACCTGGTCGTTCACATGGTCACTTTTTCCCAGATCCACAATATGAGAATGTGCAACATATCATCTGTTGTGATACGTATGCCACTTATGCCTATGATTTTGAGTTCGAGAACAGCAATGGCTTTAGCAGGAACTCAGATGCTCCCCCTGTTTTGCAATTTGCATTTCAATATACAATCATTGTACCGCCTGAAGAAAATGTCAAGAAAGGATCTATTTCCCTAGACAGGCCAAAGTATTCACTTAAACGGAGATTGAGAATACGCACACTGCAGTATGGAATAGCGAGAAATATCAATGAACTGTATGACAGTGCTGATGCAGAAGTTATACTTTCTAACCTAGTTCACAAGGTAATTTCAGCTTCCTTGGAGCAAGGTGTGAAGGAGGGCAGATTGTTACTGCATGACTGGCTTGTCATTCTCACAGCTCAATACAATGATGCCTATAAGATTGTTGAATTTGGGAAGCCTGGTACCACTGGTCCGCTTGATGTTGCATTTTCACATTGCCCACAGTTGCAACCATTACCAAGACTTATATTTGCGCTACTGAGGAGTCCACTTCTCCGTCTTCATGAAGAGGGTATACACCCAGACTATCGAATTTATCTTCAGTGCCTTTTCAGTGCTCTGGAGCCAAGCTCCCTCCTACGAGCTGTATATCCAGTATTGTCCTCATATTCAACTCCAGATAAGCAGGCATATCCTCGTCATTCGTTAAGCCGGGCAGCGCTCATAACCAGTGGCAGTCCTATTTTCTTTCTTGATGCATTTACTACTCTCATTGTTTATTATTCTTCAACAGCAGATCCTGCATTGCCGTTTCCTCCTCCACAGAACTGTCTTTTACGAGCTATAATTAACAAGCTGAAGCAAGAAAGAAGTATCACACCCAAACTTCTTTTGATTCGTAGCGGCCATGATAATGCTTATCCCTTTGAGCAGTATCTTATTGAGGAACAGGATGTTGATGGAATAGGATTGAGTAATGGGATGGGTTTTGTTTCTTTTCTTGATCAAATTAGCCGAGATGTTCTGGAATATATGAAATGA___GCAGGTGAGTACTATACAATCATTGCATCTATGGATGAGGGATTGTTTCCATCAATAAGGTTTAGGGCATTCAGAGGCATAGAAATGCTAACCATGCAAGTGTTTGAGATTTATGTGTTAATCTTAGGATGTAATCTCATAAGCCTTGCATTCTGGAATTGCACTTGCCAGTTTTGTTCTAGGCAAAAGGTCTGCAGAATAATATCAGCGTTAAATTTGTAAATCCATAGATTATCTCCAGACTCCAAGGATAATGAGTTATTGTCATTTGTTGAGTATAATAGAACTAATAATGAGCATTGCTTTTGATTAAAATCC

Fln Alignment:

sp_v1.1_unigene3224___MLSRPYAFACVLRLRTSPEFRPGRSHGHFFPDPQYENVQHIICCDTYATYAYDFEFENSNGFSRNSDAPPVLQFAFQYTIIVPPEENVKKGSISLDRPKYSLKRRLRIRTLQYGIARNINELYDSADAEVILSNLVHKVISASLEQGVKEGRLLLHDWLVILTAQYNDAYKIVEFGKPGTTGPLDVAFSHCPQLQPLPRLIFALLRSPLLRLHEEGIHPDYRIYLQCLFSALEPSSLLRAVYPVLSSYSTPDKQAYPRHSLSRAALITSGSPIFFLDAFTTLIVYYSSTADPALPFPPPQNCLLRAIINKLKQERSITPKLLLIRSGHDNAYPFEQYLIEEQDVDGIGLSNGMGFVSFLDQISRDVLEYMK
D5AD51______________MLSRPYAFACVLRLRTSPEFRPGRSHGHFFPDPQYENVQHIICCDTYATYAYDFDFENSNGFSRNSDAPPVLQFAFQYTVIVPPEENFKKGSISLDRPKYSLKRRLRIRTLQYGVARNLNELYDSADTEVILSILVHKVISASLEQGVKEGRLLLHDWLVILTAQYNDAYKIVEFGKPGT--PLDVAFSHCPQLQSLPRLIFALLRSPLLRLHEEGVHPDYRIYLQCLFSALEPSSLLRAVYPVLSSYSTPDKQAYPRHSLSRAALITSGSPIFFLDAFTTLIVYYSSTADPALPFPPPQNCLLRAIINKLKQERSITPKLLLIRSGHDNAEPFEQYLIEEQDVDGVGLSNGMGFVSFLEQISRDILEYMK

SNPs (tot: 63)

Position	A %	C %	G %	T %	Probability
23		25		75	0.996473
25		25		75	0.996473
45	20	80			0.995493
50			20	80	0.995493
78		60		40	1.0
85	12		87		0.992554
90		87	12		0.992554
91			12	87	0.992554
143			12	87	0.992554
151	87		12		0.992554
248		33		66	0.997452
312		75		25	0.996473
695	81		18		0.999994
846		12	87		0.992554
848	87			12	0.992554
849	87	12			0.992554
851	87			12	0.992554
853	12		87		0.992554
854	85	14			0.993533
855		14		85	0.993533
860	85	14			0.993533
864			85	14	0.993533
867	85	14			0.993533
869		14	85		0.993533
1000		11		88	0.923564
1043	80			20	0.999996
1044	90	10			0.90298
1045		90	10		0.90298
1046	80			20	0.999996
1047		10	90		0.90298
1051		90	10		0.90298
1052		90	10		0.90298
1053	90	10			0.90298
1055			10	90	0.90298
1057		10		90	0.90298
1060	90			10	0.90298
1061	90	10			0.90298
1062	10		90		0.90298
1129	76		23		1.0
1131	76		23		1.0
1442			80	20	0.995493
1443		20		80	0.995493
1444			20	80	0.995493
1445		20		80	0.995493
1446	20			80	0.995493
1448		80		20	0.995493
1449	80		20		0.995493
1451			20	80	0.995493
1453			20	80	0.995493
1454	20		80		0.995493
1457			16	83	0.994512
1458			16	83	0.994512
1459		16		83	0.994512
1545			87	12	0.992554
1546	87		12		0.992554
1547			12	87	0.992554
1548			12	87	0.992554
2065	82	17			1.0
2068			17	82	1.0
2069	82		17		1.0
2072	82		17		1.0
2074	17			82	1.0
2657	25			25	0.995533

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain