SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene3218

Length: 2378 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene3218
ATGGGGAACGTCGTGACCTTGGCTGTCACTCAGATTGTTGGGTTGGTTGAGAGCAGAAGCCCAAGTTGGGTATACACAGCAACTAACATATAAGCAATTTATATATATAGTTGTTTGGTGTTTGTGGTCTTCGAATTCAGCTCAACTGGTGGGTGGGTATTGCTTATAGCATTGAGAATTCATAGCACAGGGCTGGGCTTCTGGAGAAGCTGGGCTTCTGGAGAAGCAGCTGCTGCATTGAGAGTTTGGATTGAGTTAGTATATACTGTGAGAGGGATTTTGAGTTGTTTTACAGGCTTAAAGGAGAATGGTGACACAGAAACAGGCAGAGGAAGCCATTGTGACAAATTATGGAGAAATGGAGGTGGAAGCCAGAGATACACATGATACAAGTGATGGAAGCTCTATGAAGGGAGCCATTAAGAGCTTTTTCTGGCATGGAGGCTCTGTTTATGATGCCTGGTTCAGCTGTGCTTCCAATCAGGTAGCCCAAGTGCTGTTAACTTTGCCTTACTCTTTCTCGCAGCTGGGTATGGCATCTGGGATCGTATTCCAGATATTCTATGGTATAATGGGGAGCTGGACAGCATATCTCATCAGTGTTCTCTATGTTGAATACCGAACTAGGAAGGAGAAGGAGAATGTTAGGTTCAAGAACCATGTCATACAGTGGTTTGAGGTCCTGGATGGACTCTTGGGACCTTACTGGAAAGCTATCGGCCTTGCCTTTAACTGTACATTTCTTTTGTTTGGATCTGTAATACAGCTCATAGGTTGTGCAAGTAACATCTACTACATAGATAATCACCTGGACAAACGAACCTGGACATACATCTTTGGAGCTTGTTGTGCAACCACGGTCTTCATCCCCTCTTTCCATAACTACCGCATTTGGTCATTCATTGGACTTGGAATGACAACATACACTGCATGGTATATGACAATCGCAGCAGCTGTTCATGGACAGGTTGAAAATGTGGAACACTCGGCCCCAACAAAGATGGTGTTATACTTCACAGGAGCCACAAACATCCTTTACACTTTTGGGGGTCATGCAGTCACAGTTGAAATAATGCATGCCATGTGGAAGCCTCAGAAATTCAAGTATATCTACCTTTTGGCAACTCTGTATGTATTCACATTAACGCTGCCATCTGCAATATCGGTTTACTGGGCTTTTGGAGATGAGCTCTTGAATCATGCAAATGCTTTCGCTTTGCTCCCCAAGTCAGTTTTCCGTGACATTGCTGTCATTCTTATGTTAATTCACCAGTTCATTACCTTTGGCTTTGCATGTACCCCTCTCTACTTTGTTTGGGAAAAAGTCCTTGGAATGCATGATACCAAGAGCATTTTTCTTCGGGCACTAACAAGGCTGCCTGTAGTGATTCCAATCTGGTTCCTTGCAATCATATTTCCTTTCTTTGGCCCCATCAATTCTGCAGTTGGAGCTTTGTTGGTCAGTTTTACCGTCTACATCATACCGGCCATGGCACACATGTGCACCTTCAGGACAGCTCTTGCCAGACAGAATTCTATAGAAAAGCCTCCATGTTTCCTCCCTAGCTGGGCAGGCATGTACATCTTGAACATATTCATAGTAGGGTGGGTCGCCATAGTGGGCTTTGGATTTGGTGGTTGGGCAAGCGTGACCAATTTCGTCCAACAAGTGGGTACATTTGGCCTCTTTGCAAAGTGTTACCAGTGTCCTCCAAGGGTGTCACCTTTGGCTACTGGTGTGCCCACGATGTCCCCAAAATTACATGCCCTTCCTCCTCATCACAAGGGTTGATTATACAGGGAGACTGGCAGCTGTTCAACTATGGGATGATATGCATATGGAGTATACTTATTTGCCAGGATACGCGGCGATGCCTTACATAGACATGGAGATGTTTCAGTTCAAGTGTAGATGACCATGATGGTGACCTCTGTTAAACACTCCCTAACAAGACAGGGTTAGTTGAAAGTGCCCACAATAACAGGGATTTGTTTGTAATTTATACTCACTAATTTGTCATGGAGGAAGTATGTTTGCTTCTGCCCTTTGCCCATATTTATGAAGGGACGATGCAGTGTAACTGTTGATACAGGTAGTCTCAATTTTATTAAGGTTGGCAATACAGGTAGATAAGCAGCTGCGCTGTTACTAGTGGTTTGGCAGGGTCTAGGTTTTTTCTGTAGCATGTTCAGGTTAGTTACATGTCTATTAGTTGTGGAATGAGGATGTAAGGATCCACTAACATCCCTCAGCTTGTGAGTAAATCTCAAATGTTATGATTGTTTCATGTATCCTTGGTCTTTTTTGTTATTTGGAAAGCAGACCTACTGAAGTTTTTTGTAACGTTAGTCTTCAATATACCTCTTTCTCAATCAAA

Ace file of the UniGene sp_v1.1_unigene3218

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Auxin transporter-like protein 4 n=1 Tax=Medicago truncatula RepID=LAX4_MEDTR	-	-	82%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	81%
Blast2go	auxin influx carrier protein	-	-	88%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Amino acid transporter, transmembrane	IPR013057	-	0.0	88%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NVE6

Fln msg:

Fln protein: MVTQKQAEEAIVTNYGEMEVEARDTHDTSDGSSMKGAIKSFFWHGGSVYDAWFSCASNQVAQVLLTLPYSFSQLGMASGIVFQIFYGIMGSWTAYLISVLYVEYRTRKEKENVRFKNHVIQWFEVLDGLLGPYWKAIGLAFNCTFLLFGSVIQLIGCASNIYYIDNHLDKRTWTYIFGACCATTVFIPSFHNYRIWSFIGLGMTTYTAWYMTIAAAVHGQVENVEHSAPTKMVLYFTGATNILYTFGGHAVTVEIMHAMWKPQKFKYIYLLATLYVFTLTLPSAISVYWAFGDELLNHANAFALLPKSVFRDIAVILMLIHQFITFGFACTPLYFVWEKVLGMHDTKSIFLRALTRLPVVIPIWFLAIIFPFFGPINSAVGALLVSFTVYIIPAMAHMCTFRTALARQNSIEKPPCFLPSWAGMYILNIFIVGWVAIVGFGFGGWASVTNFVQQVGTFGLFAKCYQCPPRVSPLATGVPTMSPKLHALPPHHKG*

Protein Length: 496

Fln nts: ATGGGGAACGTCGTGACCTTGGCTGTCACTCAGATTGTTGGGTTGGTTGAGAGCAGAAGCCCAAGTTGGGTATACACAGCAACTAACATATAAGCAATTTATATATATAGTTGTTTGGTGTTTGTGGTCTTCGAATTCAGCTCAACTGGTGGGTGGGTATTGCTTATAGCATTGAGAATTCATAGCACAGGGCTGGGCTTCTGGAGAAGCTGGGCTTCTGGAGAAGCAGCTGCTGCATTGAGAGTTTGGATTGAGTTAGTATATACTGTGAGAGGGATTTTGAGTTGTTTTACAGGCTTAAAGGAGA_-_ATGGTGACACAGAAACAGGCAGAGGAAGCCATTGTGACAAATTATGGAGAAATGGAGGTGGAAGCCAGAGATACACATGATACAAGTGATGGAAGCTCTATGAAGGGAGCCATTAAGAGCTTTTTCTGGCATGGAGGCTCTGTTTATGATGCCTGGTTCAGCTGTGCTTCCAATCAGGTAGCCCAAGTGCTGTTAACTTTGCCTTACTCTTTCTCGCAGCTGGGTATGGCATCTGGGATCGTATTCCAGATATTCTATGGTATAATGGGGAGCTGGACAGCATATCTCATCAGTGTTCTCTATGTTGAATACCGAACTAGGAAGGAGAAGGAGAATGTTAGGTTCAAGAACCATGTCATACAGTGGTTTGAGGTCCTGGATGGACTCTTGGGACCTTACTGGAAAGCTATCGGCCTTGCCTTTAACTGTACATTTCTTTTGTTTGGATCTGTAATACAGCTCATAGGTTGTGCAAGTAACATCTACTACATAGATAATCACCTGGACAAACGAACCTGGACATACATCTTTGGAGCTTGTTGTGCAACCACGGTCTTCATCCCCTCTTTCCATAACTACCGCATTTGGTCATTCATTGGACTTGGAATGACAACATACACTGCATGGTATATGACAATCGCAGCAGCTGTTCATGGACAGGTTGAAAATGTGGAACACTCGGCCCCAACAAAGATGGTGTTATACTTCACAGGAGCCACAAACATCCTTTACACTTTTGGGGGTCATGCAGTCACAGTTGAAATAATGCATGCCATGTGGAAGCCTCAGAAATTCAAGTATATCTACCTTTTGGCAACTCTGTATGTATTCACATTAACGCTGCCATCTGCAATATCGGTTTACTGGGCTTTTGGAGATGAGCTCTTGAATCATGCAAATGCTTTCGCTTTGCTCCCCAAGTCAGTTTTCCGTGACATTGCTGTCATTCTTATGTTAATTCACCAGTTCATTACCTTTGGCTTTGCATGTACCCCTCTCTACTTTGTTTGGGAAAAAGTCCTTGGAATGCATGATACCAAGAGCATTTTTCTTCGGGCACTAACAAGGCTGCCTGTAGTGATTCCAATCTGGTTCCTTGCAATCATATTTCCTTTCTTTGGCCCCATCAATTCTGCAGTTGGAGCTTTGTTGGTCAGTTTTACCGTCTACATCATACCGGCCATGGCACACATGTGCACCTTCAGGACAGCTCTTGCCAGACAGAATTCTATAGAAAAGCCTCCATGTTTCCTCCCTAGCTGGGCAGGCATGTACATCTTGAACATATTCATAGTAGGGTGGGTCGCCATAGTGGGCTTTGGATTTGGTGGTTGGGCAAGCGTGACCAATTTCGTCCAACAAGTGGGTACATTTGGCCTCTTTGCAAAGTGTTACCAGTGTCCTCCAAGGGTGTCACCTTTGGCTACTGGTGTGCCCACGATGTCCCCAAAATTACATGCCCTTCCTCCTCATCACAAGGGTTGA___TTATACAGGGAGACTGGCAGCTGTTCAACTATGGGATGATATGCATATGGAGTATACTTATTTGCCAGGATACGCGGCGATGCCTTACATAGACATGGAGATGTTTCAGTTCAAGTGTAGATGACCATGATGGTGACCTCTGTTAAACACTCCCTAACAAGACAGGGTTAGTTGAAAGTGCCCACAATAACAGGGATTTGTTTGTAATTTATACTCACTAATTTGTCATGGAGGAAGTATGTTTGCTTCTGCCCTTTGCCCATATTTATGAAGGGACGATGCAGTGTAACTGTTGATACAGGTAGTCTCAATTTTATTAAGGTTGGCAATACAGGTAGATAAGCAGCTGCGCTGTTACTAGTGGTTTGGCAGGGTCTAGGTTTTTTCTGTAGCATGTTCAGGTTAGTTACATGTCTATTAGTTGTGGAATGAGGATGTAAGGATCCACTAACATCCCTCAGCTTGTGAGTAAATCTCAAATGTTATGATTGTTTCATGTATCCTTGGTCTTTTTTGTTATTTGGAAAGCAGACCTACTGAAGTTTTTTGTAACGTTAGTCTTCAATATACCTCTTTCTCAATCAAA

Fln Alignment:

sp_v1.1_unigene3218___KQAEEAIVTNYGEMEVEARDTHDTSDGSSMKGAIKSFFWHGGSVYDAWFSCASNQVAQVLLTLPYSFSQLGMASGIVFQIFYGIMGSWTAYLISVLYVEYRTRKEKENVRFKNHVIQWFEVLDGLLGPYWKAIGLAFNCTFLLFGSVIQLIGCASNIYYIDNHLDKRTWTYIFGACCATTVFIPSFHNYRIWSFIGLGMTTYTAWYMTIAAAVHGQVENVEHSAPTKMVLYFTGATNILYTFGGHAVTVEIMHAMWKPQKFKYIYLLATLYVFTLTLPSAISVYWAFGDELLNHANAFALLPKSVFRDIAVILMLIHQFITFGFACTPLYFVWEKVLGMHDTKSIFLRALTRLPVVIPIWFLAIIFPFFGPINSAVGALLVSFTVYIIPAMAHMCTFRTALARQNSIEKPPCFLPSWAGMYILNIFIVGWVAIVGFGFGGWASVTNFVQQVGTFGLFAKCYQCPPRVSPLATGVP--TMSPKLHALPP
A9NVE6______________KQAEEAIVMNYSEMEVEGKEPEGAQNDTSVKGNIRRLFWHGGSVYDAWFSCASNQVAQVLLTLPYSFSQLGMVSGVLFQVFYGLMGSWTAYLISVLYIEYRTRKEKENVSFKNHVIQWFEVLDGLLGSFWKVLGLAFNCTFLLCGSVIQLIGCASNIYYINDHLDKRTWTYIFGACCATTVFIPSFHNYRLWSFLGLGMTTYTAWYLTIASIVHGQTEDVKHSAPTKMVLYFTGATNILYTFGGHAVTVEIMHAMWKPKKFKAIYLLATLYVYTLTLPSAISVYWAFGDALLDHANALSLLPKSGFRDLAVVLMLIHQFITFGFACTPLYFVWEKVIGMHDTKSIVKRALARLPVVIPIWFLAIIFPFFGPINSAVGALLVSFTVYIIPAMAHILTYRTAFARKNAVEKPPFFLPSWTAVYLVNIFVVIWVLIVGFAFGGWASLTNFVRQVDSFGLFAKCYQCPPRAVAASTPPPYAAAAPKSHFAPP

SNPs (tot: 13)

Position	A %	C %	G %	T %	Probability
1504	11		88		0.923564
1517	88			11	0.923564
1626		10		90	0.90298
1684	12		87		0.992554
2004	86		13		0.999973
2007		86	13		0.999973
2302		83		16	0.999991
2303		22		77	0.999999
2309			88	11	0.923564
2310			11	77	0.968132
2333	57			28	1.0
2334	50		50		1.0
2335			60	40	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain