SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene3212

Length: 2206 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene3212
ATGGGGATCCAGGAGCTTGTGTGGCCTCCAGCAGCAGCATGAGCCCTGAAGATCCGAGCACAGGAACGATTTATCCAGAACACAAATATTCCAGCTTCTCTTCTTCTGCTGCAGCACCAGGGGGAATGGATGCAGGGAAGGATGGCGATCCCAGCCCGCAATCCCCGGGCTGTTCCGTCCGGACCCTGGAACTATCGAATTCTGGGAAACAAATCGGAGAGGGATCGAGGAAACAGTATGTGAAGCAGGTGACGGGCAGGTACAATGATACTGAACTGCACCTCGCTGTCAAGAAGGGGGATTTGGAGCGTGTGAAGGAGATTCTCAGTGGGCTTGATGATCCGCAGAGTCTGGTGAGTGAAGAGAATGATATGGGGGAAACTCCTCTATATGTGGCTGCAGAACAGGGGCACTTGGAGGTGTTGCAGGAGCTTCTGAAATCGGCCCGTCAGGATACAGTGGTCAAGAAAAATCAGTCTGGTCTTGATGCTTTCCATACAGCTGCCAAGCAGGGGCATTTAGGCATTGTGAAGGAGTTACTGAAATATCAGCGGGATCTATATATGACTAATGATTTAGCATGTTGCACCCCTCTTATTTCTGCTGCAACTAAGGGGCATGCTGAGGTGGTTAAAGAACTTTTAGCTACTGATCGCCAATTGATAGATATTTCCAAAAACAACGGAAAGAATGCTCTTCATCTGGCTGCAAGAGCTGGTTATGTAGATATAGTAAAAGCCTTTCTGGATATGGATCAACAAATGGCCCGAAGAACAGACAAAAAAGGGCAGACAGCTCTACACATGGCTGCAAAAGGGGCATTTTGCTTGGAAGTAGTGAAATTGCTCCTAAAGGTGGATCCAGCAATGGTTATGTTGCCTGACAAGAATGGAAATACAGCTTTGCATGTTGCTACAAGGAAAAAGAGGGCACAGATTGTGAATGAGTTACTATCATTGCCAGACATCAATGTTAATGCACTGAATAGGTTACACAAGACAGCTTTGGATCTCGCAGAAGAGCTACCGAGCTCAGGAGAGGCATCTGAAATCAAGGAAGCTTTGATTGAAGCTAATGCAGTTAAGGCAAAGGATTTGAATCAACCAAGAGGGGATGAGTTAAAGCAAACAGTGACTGCAATAAGACATGATGTATCCAATCAATTGAAACAGACTCGAAGGACGAATAAAAAGGTGAGTGGTATTGCAAAAGAGTTGAGGAAGCTGCACCGAGAAGGTATCAACAATGCTACAAATTCTGTGACTGTTGTTGCTGTTCTGTTTGCTACTGTTGCTTTTGCTGCAATTTTCACTGTTCCAGGAGGTTTTGTAGGAGATAATAATAATAATCCTTCCCCAGGTGCTCCTACACCTCCTAGTGAAGATAATGGAACTTCTGTTGTAGCCAATCGTCTTCCTTTCAGAATATTTTTCATATTCAATGCAATCGCACTGTTCACATCTCTAGCAGTTGTGGTTGTTCAGATAACACTAGTACCATGGGAAACCAAATCTCAAAGAAGAGTGGTATCATTCATCAATAAGCTAATGTGGTTAGCTTCTGTATGTACATCTGTAGCATTTCTTGCATCCACATATATAATTGTTGGTCGTCATGGTCGATGGATGGCAATTCTAGTATCAGCAATAGGTGGTGTGATCATGGTTGGTGTGTTGGGAACCATGACATTTTGTGTAGTAAAATTTCGAAGGAGCAGGTCACTGAGGAAAAGAAGATCTTCTATAAGCCGTGGATCAACATCCTCCCATATATATTCGGAATTTTCAGAATCCGAATATGATAATAAGATGTATGCAATCTAAATTTTATCTACTTTCATAATGCATATGGGAGTCGGTTCTCTTTGCTTTCATGTTCATTTTTTCATTTCCTCCAATCATGGTCTATATGATTATGATGCAATATCTCAGTAAGGCACCATAGTTTGGTTAAGTTGATTGGATAGGATATCCAGGAAATTTTCATGAACATTTTGTTGTATGTTTTATATTGTGTCTCAATGCATATGTTGGAACTCGCAGATTTTTATGCAATATAACATGTGCTTTATCATTGTTTGGGCACGGGAGTCATAATGGGTACGCCACTTTTATTTAGGTCACCCATTAGCTATGACCACAGTGCAGTGCAACATTAAATTAATAGAATTTGACCTCGCCTTCTGATGATGGAGACGTAGATAAGT

Ace file of the UniGene sp_v1.1_unigene3212

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	ankyrin repeat-containing protein, putative	-	-	55%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	66%
Blast2go	ankyrin repeat-containing	-	-	73%

Source	GOs	Term	Type	e value	Identity
Blast2go	response to salt stress	GO:0009651	Biological Process	0.0	73%
Blast2go	plasma membrane	GO:0005886	Cellular Component	0.0	73%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Ankyrin repeat	IPR002110	-	0.0	73%
Blast2go	Ankyrin repeat-containing domain	IPR020683	-	0.0	73%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LL37

Fln msg:

Fln protein: MSPEDPSTGTIYPEHKYSSFSSSAAAPGGMDAGKDGDPSPQSPGCSVRTLELSNSGKQIGEGSRKQYVKQVTGRYNDTELHLAVKKGDLERVKEILSGLDDPQSLVSEENDMGETPLYVAAEQGHLEVLQELLKSARQDTVVKKNQSGLDAFHTAAKQGHLGIVKELLKYQRDLYMTNDLACCTPLISAATKGHAEVVKELLATDRQLIDISKNNGKNALHLAARAGYVDIVKAFLDMDQQMARRTDKKGQTALHMAAKGAFCLEVVKLLLKVDPAMVMLPDKNGNTALHVATRKKRAQIVNELLSLPDINVNALNRLHKTALDLAEELPSSGEASEIKEALIEANAVKAKDLNQPRGDELKQTVTAIRHDVSNQLKQTRRTNKKVSGIAKELRKLHREGINNATNSVTVVAVLFATVAFAAIFTVPGGFVGDNNNNPSPGAPTPPSEDNGTSVVANRLPFRIFFIFNAIALFTSLAVVVVQITLVPWETKSQRRVVSFINKLMWLASVCTSVAFLASTYIIVGRHGRWMAILVSAIGGVIMVGVLGTMTFCVVKFRRSRSLRKRRSSISRGSTSSHIYSEFSESEYDNKMYAI*

Protein Length: 596

Fln nts: ATGGGGATCCAGGAGCTTGTGTGGCCTCCAGCAGCAGC_-_ATGAGCCCTGAAGATCCGAGCACAGGAACGATTTATCCAGAACACAAATATTCCAGCTTCTCTTCTTCTGCTGCAGCACCAGGGGGAATGGATGCAGGGAAGGATGGCGATCCCAGCCCGCAATCCCCGGGCTGTTCCGTCCGGACCCTGGAACTATCGAATTCTGGGAAACAAATCGGAGAGGGATCGAGGAAACAGTATGTGAAGCAGGTGACGGGCAGGTACAATGATACTGAACTGCACCTCGCTGTCAAGAAGGGGGATTTGGAGCGTGTGAAGGAGATTCTCAGTGGGCTTGATGATCCGCAGAGTCTGGTGAGTGAAGAGAATGATATGGGGGAAACTCCTCTATATGTGGCTGCAGAACAGGGGCACTTGGAGGTGTTGCAGGAGCTTCTGAAATCGGCCCGTCAGGATACAGTGGTCAAGAAAAATCAGTCTGGTCTTGATGCTTTCCATACAGCTGCCAAGCAGGGGCATTTAGGCATTGTGAAGGAGTTACTGAAATATCAGCGGGATCTATATATGACTAATGATTTAGCATGTTGCACCCCTCTTATTTCTGCTGCAACTAAGGGGCATGCTGAGGTGGTTAAAGAACTTTTAGCTACTGATCGCCAATTGATAGATATTTCCAAAAACAACGGAAAGAATGCTCTTCATCTGGCTGCAAGAGCTGGTTATGTAGATATAGTAAAAGCCTTTCTGGATATGGATCAACAAATGGCCCGAAGAACAGACAAAAAAGGGCAGACAGCTCTACACATGGCTGCAAAAGGGGCATTTTGCTTGGAAGTAGTGAAATTGCTCCTAAAGGTGGATCCAGCAATGGTTATGTTGCCTGACAAGAATGGAAATACAGCTTTGCATGTTGCTACAAGGAAAAAGAGGGCACAGATTGTGAATGAGTTACTATCATTGCCAGACATCAATGTTAATGCACTGAATAGGTTACACAAGACAGCTTTGGATCTCGCAGAAGAGCTACCGAGCTCAGGAGAGGCATCTGAAATCAAGGAAGCTTTGATTGAAGCTAATGCAGTTAAGGCAAAGGATTTGAATCAACCAAGAGGGGATGAGTTAAAGCAAACAGTGACTGCAATAAGACATGATGTATCCAATCAATTGAAACAGACTCGAAGGACGAATAAAAAGGTGAGTGGTATTGCAAAAGAGTTGAGGAAGCTGCACCGAGAAGGTATCAACAATGCTACAAATTCTGTGACTGTTGTTGCTGTTCTGTTTGCTACTGTTGCTTTTGCTGCAATTTTCACTGTTCCAGGAGGTTTTGTAGGAGATAATAATAATAATCCTTCCCCAGGTGCTCCTACACCTCCTAGTGAAGATAATGGAACTTCTGTTGTAGCCAATCGTCTTCCTTTCAGAATATTTTTCATATTCAATGCAATCGCACTGTTCACATCTCTAGCAGTTGTGGTTGTTCAGATAACACTAGTACCATGGGAAACCAAATCTCAAAGAAGAGTGGTATCATTCATCAATAAGCTAATGTGGTTAGCTTCTGTATGTACATCTGTAGCATTTCTTGCATCCACATATATAATTGTTGGTCGTCATGGTCGATGGATGGCAATTCTAGTATCAGCAATAGGTGGTGTGATCATGGTTGGTGTGTTGGGAACCATGACATTTTGTGTAGTAAAATTTCGAAGGAGCAGGTCACTGAGGAAAAGAAGATCTTCTATAAGCCGTGGATCAACATCCTCCCATATATATTCGGAATTTTCAGAATCCGAATATGATAATAAGATGTATGCAATCTAA___ATTTTATCTACTTTCATAATGCATATGGGAGTCGGTTCTCTTTGCTTTCATGTTCATTTTTTCATTTCCTCCAATCATGGTCTATATGATTATGATGCAATATCTCAGTAAGGCACCATAGTTTGGTTAAGTTGATTGGATAGGATATCCAGGAAATTTTCATGAACATTTTGTTGTATGTTTTATATTGTGTCTCAATGCATATGTTGGAACTCGCAGATTTTTATGCAATATAACATGTGCTTTATCATTGTTTGGGCACGGGAGTCATAATGGGTACGCCACTTTTATTTAGGTCACCCATTAGCTATGACCACAGTGCAGTGCAACATTAAATTAATAGAATTTGACCTCGCCTTCTGATGATGGAGACGTAGATAAGT

Fln Alignment:

sp_v1.1_unigene3212___TLELSNSGKQIGEGSRKQYVKQVTGRYNDTELHLAVKKGDLERVKEILSGL------DDPQS----------LVSEENDMGETPLYVAAEQGHLEVLQELLKSARQDTVVKKNQSGLDAFHTAAKQGHLGIVKELLKYQRDLYMTNDLACCTPLISAATKGHAEVVKELLATDRQLIDISKNNGKNALHLAARAGYVDIVKAFLDMDQQMARRTDKKGQTALHMAAKGAFCLEVVKLLLKVDPAMVMLPDKNGNTALHVATRKKRAQIVNELLSLPDINVNALNRLHKTALDLAEELPSSGEASEIKEALIEANAVKAKDLNQPRGDELKQTVTAIRHDVSNQLKQTRRTNKKVSGIAKELRKLHREGIXXXXXXXXXXXXXXXXXXXXXXXXXPGGFVGDNNNNPSPGAPTPPSEDNGTSVVANRLPFRIFFIFNAIALFTSLAVVVVQITLVPWETKSQRRVVSFINKLMWLASVCTSVAFLASTYIIVGRHGRWMAILVSAIGGVIMVGVLGTMTFCVVKFXXXXXXXXXXXXXXXXXXXXHIYSEFSESEYDNKMYAI
B8LL37______________SLVLSNSGKALEQTGKKQYVKQVTGRYNDTDLHLAAKKGDLEAVKKILDGLHSENGVQNPQADIEMGEIRSCLVDEENELFETPLYIAAEQGHLDVLKELLKFAHPETLVKKNHTGYDVFHIAAKQGHISIVKELLNYHPDLSKTLDLSNATPLISAATKGHVEVVNELLAKDSQLTGIARSNGKNALHMAARSGYTDIVRALLAKEPQMARRTDKKGQTALHMAAKGANCLDVVKELLQVDPAVVMLPDIKGNTSLHVATRKKREEIVKELLKMPDINVNVMNRLHKTAMDLAEELPNSDEASEIKDCLADFGAVRAKDLNRPR-DELKKTVSEIHHEVYHQLKQTEKTNKNVNGIAKELKKLHREGINNATNSVTVVAVLFATIAFAALFTVPGGY---------------GYSVYGEATVANNTLFQIFFISNAFALFTSLAVVVVQITLVRWETKSQRKVVGVINKLMWLASACTTVAFIASAYIVAGRHELWLAIIVTLIGGIIMVGVLGTMTYFLVKFKRNRSFRKRKSSNSRGSNSWNLPSEFSESEIE-KIYVL

SNPs (tot: 17)

Position	A %	C %	G %	T %	Probability
330			66	33	0.997452
427	85		14		0.993533
659	75			25	0.996473
683		66		33	0.997452
748	33			66	0.997452
750			33	66	0.997452
751		66	33		0.997452
752			33	66	0.997452
1074		14		85	0.993533
1075		14		85	0.993533
1076			85	14	0.993533
1077	85			14	0.993533
1078	85		14		0.993533
1082	85		14		0.993533
1088		16	83		0.994512
1090		16		83	0.994512
1313	88		11		0.923564

SSRs (tot: 1)

Start position	End position	Sequence	Length
1336	1349	ATA ATA ATA ATA AT	14

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain