SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene3204

Length: 530 nt

Origin of reads: Biogeco_1 Biogeco_2 Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v1.1_unigene3204
GGACAGAAAAAGACTTCAAACTATGCTGATATTCCTGGTGCACCTCATGTTTACAAGGTTGATGACCTTCCAGTTTACAGCATGGCAACACCAACAGTTGATGGAGCTAAAGCAATGCTAGCCTGTTTGCATGTTGAGCCTACATCTTCTGGGTATCCATCTGGCAAAGCTACTGTGACTGATCTGAGAGAGGAAGTGGTGGTCTATATTTGTGGCAAACCATTTGTGCTGAGAGAGCTTTATCAGCCAGTAGACACTCTGAAACATGTTGGAATTAAAGGCCCTGTGGTTGAACATATGGAGGCTAGATTAAAGGAAGATATTCTTTCTGAGGCCGAACGATCAGGTGGGCGTGTGCTTTTACATCGGGAGGAGGTTAATCCTGTCACAGGCCAGTCGGACATTATAGGATATTGGGAGAATATCTCGCGTGAAAATGTCAAGACACCAGTAGAAGTCTATGCTACTCTGAAAGATGAAGGGTACAATATTGATTACAAAAGGATACCATTGACAAGAGAAAGAGAAGC

Ace file of the UniGene sp_v1.1_unigene3204 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Unassigned protein	-	-	-
FL-Next	tr=Putative uncharacterized protein; Ricinus communis (Castor bean).	-	-	68%
Blast2go	protein	-	-	73%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: B9RN01

Fln msg: Distance to subject end: 193 aas, your sequence is shorter than subject: 176 - 1249

Fln protein: GQKKTSNYADIPGAPHVYKVDDLPVYSMATPTVDGAKAMLACLHVEPTSSGYPSGKATVTDLREEVVVYICGKPFVLRELYQPVDTLKHVGIKGPVVEHMEARLKEDILSEAERSGGRVLLHREEVNPVTGQSDIIGYWENISRENVKTPVEVYATLKDEGYNIDYKRIPLTRERE

Protein Length: 177

Fln nts: GGACAGAAAAAGACTTCAAACTATGCTGATATTCCTGGTGCACCTCATGTTTACAAGGTTGATGACCTTCCAGTTTACAGCATGGCAACACCAACAGTTGATGGAGCTAAAGCAATGCTAGCCTGTTTGCATGTTGAGCCTACATCTTCTGGGTATCCATCTGGCAAAGCTACTGTGACTGATCTGAGAGAGGAAGTGGTGGTCTATATTTGTGGCAAACCATTTGTGCTGAGAGAGCTTTATCAGCCAGTAGACACTCTGAAACATGTTGGAATTAAAGGCCCTGTGGTTGAACATATGGAGGCTAGATTAAAGGAAGATATTCTTTCTGAGGCCGAACGATCAGGTGGGCGTGTGCTTTTACATCGGGAGGAGGTTAATCCTGTCACAGGCCAGTCGGACATTATAGGATATTGGGAGAATATCTCGCGTGAAAATGTCAAGACACCAGTAGAAGTCTATGCTACTCTGAAAGATGAAGGGTACAATATTGATTACAAAAGGATACCATTGACAAGAGAAAGAGAAGC

Fln Alignment:

sp_v1.1_unigene3204___KKTSNYADIPGAPHVYKVDDLPVYSMATPTVDGAKAMLACLHVEPTSSGYPSGKATVTDLREEVVVYICGKPFVLRELYQPVDTLKHVGIKGPVVEHMEARLKEDILSEAERSGGRVLLHREEVNPVTGQSDIIGYWENISRENVKTPVEVYATLKDEGYNIDYKRIPLTRERE
B9RN01______________QRTSSHLQIHGAPHVYKVDGYPVYSMATPTIAGAKEMLAYLGAKPNGEGSLAQKVILTDLREEAVVYINGTPFVLRELHKPVDTLKHVGITGPLVEHMEARLKEDIVSEVRESGGRMLLHREEYNPATNQSSVIGYWENIFANDVKTPAEVYAALKDEGYDMTYRRIPLTRERD

SNPs (tot: 6)

Position	A %	C %	G %	T %	Probability
235	87	12			0.992554
236		12		87	0.992554
237	75		25		1.0
300		11		88	0.923564
305			87	12	0.992554
509	37			12	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain