SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene3200

Length: 516 nt

Origin of reads: Uagpf

UniGene Fasta

>sp_v1.1_unigene3200
CGTCGTGACCTTGGCTGTCACTCATGTCTACGGTCCAAGTGTCGAGGAGGTGCAGAGCATCGTGGAGGGGGAGCAGTCCTTCGAAATAGAGAACATGAGGCTTCGTCGTGACCTTGGCTGTCACTCATTGTTGGACGTTAGAAAAGGGGAAGAGGAGAGGTTTGGGAGAATAGTAAGTAACTTTTACAAATCCGTGTTTGAGAATATTGTGGGAAATCACTTGGGGTCGGAGAAGCATCTGGTTGATGAAATTTTCACGAGGATTGCAAAGAGAGCGGCTGCTAAATATGAAGAGTTCGTCACCAGTAACATGGACCTGGTTGTTGCTGTTCTCATTCGCAAAAGAGCTTGATTCACTCTTTTGGTTATCTTTGCAAGCAGGCTTTATTATAATAAGAGCAGATTAAAAAACCATGAGCTTCGTTCTGATATTTTCAAGGATGTAAGGCTAACAATATTATTATTTTATTATAAGGAAGTCTCTCGTAGCTATCTATCCTATTTCAGTTTCTTCAC

Ace file of the UniGene sp_v1.1_unigene3200

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Methyltransf_7 domain containing protein	-	-	1.0e-12	29%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	56%
Blast2go	unknown [Picea sitchensis]	-	-	2.49148e-26	72%

Source	InterPros	Term	Type	e value	Identity
Blast2go	SAM dependent carboxyl methyltransferase	IPR005299	-	2.49148e-26	72%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NQW8

Fln msg: your sequence is shorter than subject: 117 - 394

Fln protein: VVTLAVTHVYGPSVEEVQSIVEGEQSFEIENMRLRRDLGCHSLLDVRKGEEERFGRIVSNFYKSVFENIVGNHLGSEKHLVDEIFTRIAKRAAAKYEEFVTSNMDLVVAVLIRKRA*

Protein Length: 118

Fln nts: CGTCGTGACCTTGGCTGTCACTCATGTCTACGGTCCAAGTGTCGAGGAGGTGCAGAGCATCGTGGAGGGGGAGCAGTCCTTCGAAATAGAGAACATGAGGCTTCGTCGTGACCTTGGCTGTCACTCATTGTTGGACGTTAGAAAAGGGGAAGAGGAGAGGTTTGGGAGAATAGTAAGTAACTTTTACAAATCCGTGTTTGAGAATATTGTGGGAAATCACTTGGGGTCGGAGAAGCATCTGGTTGATGAAATTTTCACGAGGATTGCAAAGAGAGCGGCTGCTAAATATGAAGAGTTCGTCACCAGTAACATGGACCTGGTTGTTGCTGTTCTCATTCGCAAAAGAGCTTGA___TTCACTCTTTTGGTTATCTTTGCAAGCAGGCTTTATTATAATAAGAGCAGATTAAAAAACCATGAGCTTCGTTCTGATATTTTCAAGGATGTAAGGCTAACAATATTATTATTTTATTATAAGGAAGTCTCTCGTAGCTATCTATCCTATTTCAGTTTCTTCAC

Fln Alignment:

sp_v1.1_unigene3200___YGPSVEEVQSIVEGEQSFEIENMRLRRDLGCHSLLDVRKGEEERFGRIVSNFYKSVFENIVGNHLGSEKHLVDEIFTRIAKRAAAKYEEFVTSNMDLVVAVLIRK
A9NQW8______________YGPSVEELRSIVETENSFEIKSVRVLSGFPLHPLLEVREGEEQMFGRIVGKHYRALFENIVGAHLRWDEYLIDEFFARIANRAAAKYGEYLPNTLDLVTVFLLRK

SNPs (tot: 16)

Position	A %	C %	G %	T %	Probability
172	75	25			1.0
173	75		25		1.0
175	70	30			1.0
178	10		20		0.999998
179	90	10			0.90298
181	60	20			0.999999
182			80	20	0.999996
184	80		20		0.999996
185	70	10	20		0.999998
188			20	80	0.999996
189		10		90	0.90298
190		20		80	0.999996
191	90		10		0.90298
192		90		10	0.90298
194	80	20			0.999996
199	10	90			0.90298

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain