SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene3199

Length: 1605 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene3199

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	[R] COG0596 Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily)	-	-	42%
FL-Next	sp=Protein phosphatase methylesterase 1; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	92%
Blast2go	protein	-	-	81%

Source	GOs	Term	Type	Identity
Blast2go	protein demethylation	GO:0006482	Biological Process	81%
Blast2go	protein phosphatase 2A binding	GO:0051721	Molecular Function	81%
Blast2go	protein C-terminal methylesterase activity	GO:0051722	Molecular Function	81%
Blast2go	vacuole	GO:0005773	Cellular Component	81%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5A9P8

Fln msg:

Fln protein: MDTNAMDVLPEESEDSEQSNAPEERSASFSLPPPIPATQSMATKYSPLPWKGYFDNEEDINIPESNSTFHIYSAGTEGPVIFCLHGGGYSGLSFALAAGKLKQKVRVVAMDLRGHGKSQTDDDINISIERLCEDVLAVIKTLYGHDPPAIVLVGHSMGGSIAVHLAAKKVLSCCAGLVVVDVVEGTAMASLVHMQKILSNRPRHFPSVEKAIEWSVKGGSLRNIESARVSVPSTLRFNDERECYVWRTPLEKTENYWKCWYEGLSEMFLSCPIAKLLLIAGTDRLDRSLTIGQMQGKFQMIVIRHTGHAIQEDVPDEFASVVLNFISRNRIGPHGIEIPGMHR*

Protein Length: 345

Fln nts: TACATACCACGTCAGCAGCCACAGAAACACAATATTTGGCGGAATAGCCGCCGGCTATGGGGGGAGCAAAACCTCACTTACGGAGGGACCAAAACTGTCACTCGCACATCGACCATCGAACTCAAACGACAAACAGTATTCAGATCGAATTCACCCGAGAAGAAAGAAACA_-_ATGGACACCAATGCCATGGATGTTCTTCCCGAGGAATCGGAGGATTCTGAGCAATCGAATGCTCCCGAAGAAAGATCTGCATCTTTCTCTCTTCCGCCCCCAATCCCTGCTACGCAGAGTATGGCAACCAAATATTCACCATTGCCATGGAAGGGCTATTTTGATAATGAAGAGGACATCAACATTCCAGAATCCAACAGTACATTCCATATATACTCTGCAGGAACTGAAGGGCCAGTTATTTTCTGTCTGCATGGAGGTGGTTATTCAGGGCTCTCCTTTGCATTGGCAGCTGGAAAGTTAAAACAAAAAGTTCGTGTGGTGGCCATGGATCTTCGGGGACATGGAAAGTCACAGACGGACGATGACATAAATATTTCAATAGAGAGATTATGTGAAGATGTGTTGGCTGTTATCAAGACATTATATGGACATGATCCACCAGCTATTGTGTTGGTTGGGCATAGCATGGGAGGTTCAATAGCAGTGCACCTTGCGGCAAAAAAGGTTCTTTCCTGCTGCGCAGGGCTGGTTGTTGTAGATGTAGTTGAGGGAACTGCAATGGCATCTTTAGTTCACATGCAGAAAATTCTTTCAAACAGGCCACGCCATTTTCCATCTGTTGAGAAAGCTATTGAATGGAGTGTTAAAGGGGGATCACTAAGAAATATTGAATCTGCTCGTGTATCAGTTCCTTCGACATTGAGATTTAATGATGAGAGGGAATGCTATGTTTGGCGTACACCTCTTGAGAAAACTGAAAACTACTGGAAATGCTGGTATGAAGGTTTATCAGAAATGTTTCTCTCTTGTCCAATTGCAAAGCTTTTACTCATAGCTGGAACGGACAGACTAGACAGATCCTTGACAATTGGGCAAATGCAAGGAAAATTTCAGATGATAGTGATTCGTCATACAGGCCATGCTATCCAGGAGGATGTCCCTGATGAATTTGCCTCAGTAGTTCTAAATTTTATTTCTCGCAATCGAATAGGTCCTCATGGAATAGAGATTCCTGGGATGCACCGTTGA___AGATGAGAAATTCAGCTCTTGGCATCGCGTTTCTTTATCTTTGTAGCTACTTTTTCTGTTTTGGTAAATTAGAGGTCCATGTTTTTACAAAGGAAACATTCAATTTCAAGAATGAGGTTTGTTTTGTATGTTGATTAGTAATGTCAAATTCCACCATTCTGGGGTCGACTTGTAATTTAATTCCTTTCTCATGTTGTAAAACATGGTGCATAAAAATGCCTCCATGTTATTCTACAACTTGTTAACACAATATCACATGCATCAAATTCTCGCATTATGATTACCATAACATGATGTATTTGTCCTGTAAACTTACTTTCATCATAATGTATGTCTATTTTAGGATTAAGTGTATGTCATTGTGCTTCACACGTATAGACTATCTGCACCAAACTCATGATA

Fln Alignment:

sp_v1.1_unigene3199___MDTNAMDVLPEESEDSEQSNAPEERSASFSLPPPIPATQSMATKYSPLPWKGYFDNEEDINIPESNSTFHIYSAGTEGPVIFCLHGGGYSGLSFALAAGKLKQKVRVVAMDLRGHGKSQTDDDINISIERLCEDVLAVIKTLYGHDPPAIVLVGHSMGGSIAVHLAAKKVLSCCAGLVVVDVVEGTAMASLVHMQKILSNRPRHFPSVEKAIEWSVKGGSLRNIESARVSVPSTLRFNDERECYVWRTPLEKTENYWKCWYEGLSEMFLSCPIAKLLLIAGTDRLDRSLTIGQMQGKFQMIVIRHTGHAIQEDVPDEFASVVLNFISRNRIGPHGIEIPGMHR
D5A9P8______________MDTNALDVLPEEPEDSEQSQTPEERSASFSLPPPIPATQSMATKYSPLPWKGYFDNEEDINIPESNSTFHVYSAGTEGPVIFCLHGGGYSGLSFALAAGKLKQKVRVVAMDLRGHGNSQTDDETDISIERLCEDVLAVIKTLYGHDPPAIVLVGHSMGGSIAVHLAAKKVISSCAGLVVVDVVEGTAMASLIHMQQILSNRPRHFPSVEKAIEWSVKVGSLRNIESARASVPSTLKFDDERECYVWRTPLEKSESYWKHWYEGLSEMFLSCPVPKLLLLAGTDRLDRSLTIGQMQGKFQMIVIRHTGHAIQEDVPDEFASVVLNFISRNQIGPHGIQIPGLRR

SNPs (tot: 12)

Position	A %	C %	G %	T %	Probability
214	83		16		0.994512
273		83		16	0.994512
291	85		14		0.993533
363	12		87		0.992554
392			12	87	0.992554
612		85		14	0.993533
719	80			20	0.995493
739		75		25	0.996473
917	66		33		0.997452
1383		10		90	0.90298
1514	84			15	0.999986
1546	12			87	0.992554

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain