SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene3190

Length: 1679 nt

Origin of reads: Biogeco_1 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene3190

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Zinc knuckle family protein n=1 Tax=Arabidopsis lyrata subsp. lyrata RepID=D7LPE8_ARALY	-	-	38%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	79%
Blast2go	zinc knuckle (cchc-type) family protein	-	-	50%

Source	InterPros	Term	Type	Identity
Blast2go	Zinc finger, CCHC-type	IPR001878	-	50%
Blast2go	Zinc finger, GRF-type	IPR010666	-	50%
Blast2go	Zinc finger, CCHC retroviral-type	IPR013084	-	50%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LPJ7

Fln msg:

Fln protein: MDDHLAVEDDEFLSLVDAVEANVLKKRKMNDGGGSYTPPSNSNHNPNSSEEEGQYLAALRGSNSHLWQTMNIPKTFYDKRPAETASYGGAGGGGGGAAGGVCFKCQQPGHWAKDCVASTYAGPDRGDESGPQAPEKQCPCGGGPCLVLISSTEKNPGRRFYRCPVREDGGRCKFFEWCDAAQGSSGTYGGQTRVFSTDISKGSELSMQCPCGAGLCLVLTSKTDKNLGRQFFRCPLKQEEGPCKFFKWCDELNSTSNPSPSMARGFSSNSGGTPSNSGRTGPSLRCYKCGMDGHWAKDCTNSSSGLTGVYGTAQGERSSASNTCFKCGQAGHWAKDCSSQVSNSSFSHRGACRPASSTYRSR*

Protein Length: 364

Fln nts: CGTCGTGACCTTGGCTGTCACTCATTTTTAACTGTGTTCCTTCCCACCAATTGGGATAAAATTGCAGTTTCAAATCATATTGCGGCATCCGAAGCGCGAGCATTCAAATGGTTTTTCATCGGTTACGAACGTTATCTTGAAGCGAGGAGAGTCGTGAAATCGTGGGAAGCGTTTCAGAATC_-_ATGGATGATCATCTAGCGGTGGAGGACGATGAATTCCTGTCTCTCGTGGATGCAGTGGAGGCCAATGTCTTGAAGAAACGAAAGATGAATGACGGTGGTGGCTCCTATACACCTCCTTCCAACTCCAATCACAATCCCAATTCCAGTGAAGAAGAAGGTCAGTACCTTGCTGCTCTGAGGGGAAGCAACAGCCATCTGTGGCAGACAATGAACATTCCCAAGACATTTTATGATAAGAGGCCGGCCGAAACTGCTTCCTATGGAGGTGCCGGGGGAGGAGGAGGAGGAGCAGCAGGAGGTGTTTGTTTTAAATGCCAGCAACCAGGGCATTGGGCTAAGGACTGTGTGGCATCAACTTATGCAGGGCCAGACAGAGGCGATGAATCTGGCCCTCAAGCGCCGGAAAAACAGTGCCCGTGTGGTGGAGGACCTTGTCTTGTCTTGATTTCAAGTACCGAGAAAAATCCAGGCCGAAGATTTTACAGGTGCCCTGTGAGAGAGGATGGTGGTAGATGCAAATTTTTTGAATGGTGTGACGCTGCTCAAGGTTCTTCAGGAACATATGGAGGTCAAACTAGGGTTTTCAGCACAGATATTTCAAAAGGATCAGAGCTGTCCATGCAATGCCCTTGTGGTGCTGGCCTTTGTCTTGTATTGACATCCAAGACGGATAAAAATTTGGGCCGTCAATTCTTTCGATGTCCTTTGAAACAGGAGGAAGGACCTTGCAAGTTCTTCAAGTGGTGTGATGAATTGAACTCGACCAGTAATCCTTCGCCATCTATGGCTCGTGGTTTCTCTTCTAACAGTGGTGGCACACCGAGTAATTCGGGAAGAACTGGACCTTCTCTTCGCTGCTACAAGTGTGGAATGGATGGTCATTGGGCCAAAGATTGTACAAATTCTTCGTCTGGTCTTACTGGAGTATATGGCACTGCACAAGGGGAGAGATCTAGTGCTTCTAATACCTGCTTCAAGTGTGGCCAAGCTGGCCATTGGGCAAAGGATTGCTCCTCTCAAGTTTCAAATTCTTCGTTTAGCCATCGTGGGGCATGTCGTCCGGCTTCATCAACATACAGGTCCAGATAA___TGTGAATATTGAAATAATAATATTTACAAAATACGAAGGTGACATACTTCATCAGAATGTTTTTGTTCGAGTAAAGAAGAAACTAATTTTTGGCTCCTTTTGATCAGGAAACTAGTAGTGTTTTGAATATAAAAGAAAATTTGATGGGTGCTTTTTGATAGATCTAAAATAGTCTGGTACCAAAATAGTTCCTCTAGGACAAGCGAATCAGCTGAATTGTATGGCAGTATGACACAATTGTAAAATATACAGTTTGTGTTCTCTTAATAATGACGTGTGTTGTTAGAATTCATTTAGGTGATATTGGCATAAATGGAGATAATGTTTTTGTACTTCATGGGAATGCTTCTGCTCAATCTTGGAGGGTTTGTTTACTGTCAAGAGCTTTGATCCTTACACGACTATTAGT

Fln Alignment:

sp_v1.1_unigene3190___MDDHLAVEDDEFLSLVDAVEANVLKKRKMNDGGGSYTXXXXXXXXXXXXXXX----GQYLAALRGSNSHLWQTMNIPKTFYDKRPAETASYXXXXXXXXXXXXXVCFKCQQPGHWAKDCVASTYAGPDRGDESGPQAPEKQCPCGGGPCLVLISSTEKNPGRRFYRCPVREDGGRCKFFEWCDAAQGSSGTYGGQTRVFSTDISKGSELSMQCPCGAGLCLVLTSKTDKNLGRQFFRCPLKQEEGPCKFFKWCDELNSTSNPSPSMARGFXXXXXXXXXXXXXXXXXLRCYKCGMDGHWAKDCTNSSSGLTGVYGTAQGERSSASNTCFKCGQAGHWAKDCSSQVS----------NSSFSHRGACRPASSTYRSR
B8LPJ7______________MDDDDLVEDDEFLSLVDAVEADIMKRRKMNDGG-SYTSPSNSNPNPNPNPNPVGEEGPYLAALRGSNSHLWQTMNNPKTNTNKRPAETASYGGVGGGGVGVGG-VCFKCQQPGHWAKDCVASTYAGPNRGDESGPQAPEKQCPCGGGPCLVLMSSTEKNPGRKFYKCPLREDGGRCNFFEWCDAAQGSSGAYGGQARAFSADISEGSEPSMQCPCGAGLCPVLTAKTERNSGRQFFRCPLKEGEGSCRFFKWCDELNSISNPLPSVAHGFSSNNDNTPSNSGRTRPSLCCYKCGMDGHWAKDCTNSSSGLIGVSGTGQGERSSASNTCFKCGQAGHWAKDCTSQVSNSSYGGREFLNSSFNRRGASRPTSSTYRSR

SNPs (tot: 28)

Position	A %	C %	G %	T %	Probability
1108			33	66	0.997452
1109	66		33		0.997452
1179			16	83	0.994512
1246		83		16	0.994512
1304	40		60		1.0
1331		20		60	0.99255
1369		66	33		0.997452
1371		33		66	0.997452
1372			33	66	0.997452
1376		33		66	0.997452
1379	66			33	0.997452
1382	66	33			0.997452
1383	66			33	0.997452
1384	66		33		0.997452
1385		66		33	0.997452
1386		33		66	0.997452
1387	80	20			0.995493
1388		20	80		0.995493
1396		25		75	0.996473
1397		25		75	0.996473
1401	75		25		0.996473
1402	75	25			0.996473
1404	75		25		0.996473
1408	75	25			0.996473
1410		25	75		0.996473
1411	75			25	0.996473
1412	75	25			0.996473
1508		75		25	0.996473

SSRs (tot: 1)

Start position	End position	Sequence	Length
455	470	GGA GGA GGA GGA GGA G	16

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain